Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13388 | 5' | -58.6 | NC_003409.1 | + | 42009 | 0.67 | 0.703171 |
Target: 5'- aGCGagaCCAGCUcuCcGUGCcACCCCCAc -3' miRNA: 3'- -UGUg--GGUCGAucGuCACGaUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 133698 | 0.75 | 0.271354 |
Target: 5'- uGCACcgCCAGCggUAGCAG-GuCUGCCCCCAg -3' miRNA: 3'- -UGUG--GGUCG--AUCGUCaC-GAUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 14194 | 0.69 | 0.549722 |
Target: 5'- uGCGCuCCgAGCUGGCAGaGC-ACCCCgAg -3' miRNA: 3'- -UGUG-GG-UCGAUCGUCaCGaUGGGGgU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 128072 | 0.68 | 0.621199 |
Target: 5'- -gGCCCAuGCggGGCucUGCUGCCCUCAc -3' miRNA: 3'- ugUGGGU-CGa-UCGucACGAUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 26344 | 0.67 | 0.656218 |
Target: 5'- gACAUCCAGCUcuccgguacaggcgcAGgGGUGUaUGCCCUCGu -3' miRNA: 3'- -UGUGGGUCGA---------------UCgUCACG-AUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 130759 | 0.67 | 0.662384 |
Target: 5'- -gGCCCAGCUgGGCAGcaccguCCCCCGc -3' miRNA: 3'- ugUGGGUCGA-UCGUCacgau-GGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 23754 | 0.67 | 0.67264 |
Target: 5'- gGCaACCuCAGCUgggaauaccAGCGGa-CUACCCCCAa -3' miRNA: 3'- -UG-UGG-GUCGA---------UCGUCacGAUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 88201 | 0.67 | 0.67264 |
Target: 5'- gGCGCCUuagGGggAGCAgGUGCUgcaGCCCCUg -3' miRNA: 3'- -UGUGGG---UCgaUCGU-CACGA---UGGGGGu -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 51807 | 0.67 | 0.682863 |
Target: 5'- aACugCagaGGCUGGCGcGUGCUACgCCgGa -3' miRNA: 3'- -UGugGg--UCGAUCGU-CACGAUGgGGgU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 47207 | 1.08 | 0.00146 |
Target: 5'- aACACCCAGCUAGCAGUGCUACCCCCAu -3' miRNA: 3'- -UGUGGGUCGAUCGUCACGAUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 76780 | 0.67 | 0.703171 |
Target: 5'- gGCA-CCAGgaGGCGGUuuaGCggUGCCCCCGu -3' miRNA: 3'- -UGUgGGUCgaUCGUCA---CG--AUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 55165 | 0.66 | 0.762338 |
Target: 5'- uUACCCGGgcc-CGGUGCUACUUCCAg -3' miRNA: 3'- uGUGGGUCgaucGUCACGAUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 113691 | 0.66 | 0.713239 |
Target: 5'- gGCGCCCAGaauccGCAccGUcCUACCCCCc -3' miRNA: 3'- -UGUGGGUCgau--CGU--CAcGAUGGGGGu -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 122186 | 0.66 | 0.714241 |
Target: 5'- uACACCCAGUguaagaaugucuguGguGUGCUGCgagaCCCUAu -3' miRNA: 3'- -UGUGGGUCGau------------CguCACGAUG----GGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 4211 | 0.66 | 0.742983 |
Target: 5'- gGCGCCCAGCUGuuuGCGgccaacucuGUGCUcuACCUgaCCAg -3' miRNA: 3'- -UGUGGGUCGAU---CGU---------CACGA--UGGG--GGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 102861 | 0.66 | 0.723236 |
Target: 5'- gGCGCCC-GCUAGcCAGaGCcUACUUCCAc -3' miRNA: 3'- -UGUGGGuCGAUC-GUCaCG-AUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 5793 | 0.66 | 0.742005 |
Target: 5'- -gACUCAGCUGGUuccgGCcgaggagUACCCCCAc -3' miRNA: 3'- ugUGGGUCGAUCGuca-CG-------AUGGGGGU- -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 47361 | 0.68 | 0.621199 |
Target: 5'- cACugCUAGCUGGguGuUGCUGUCCCa- -3' miRNA: 3'- -UGugGGUCGAUCguC-ACGAUGGGGgu -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 132656 | 0.68 | 0.600625 |
Target: 5'- uCGCCCaacaGGCUGGC-GUGggACCCCUg -3' miRNA: 3'- uGUGGG----UCGAUCGuCACgaUGGGGGu -5' |
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13388 | 5' | -58.6 | NC_003409.1 | + | 119226 | 0.67 | 0.672641 |
Target: 5'- gGCaACCuCAGCUgggaauaccAGCGGa-CUACCCCCAa -3' miRNA: 3'- -UG-UGG-GUCGA---------UCGUCacGAUGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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