miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13406 5' -44.3 NC_003409.1 + 116990 0.66 0.999998
Target:  5'- --cGGGCACUacaUCUGGGAgaaACUGCgcuuAGGc -3'
miRNA:   3'- aauCUUGUGA---AGACCUUa--UGAUG----UCC- -5'
13406 5' -44.3 NC_003409.1 + 94111 0.66 0.999995
Target:  5'- --uGGACGCUUCUGGGGg---GUAGGg -3'
miRNA:   3'- aauCUUGUGAAGACCUUaugaUGUCC- -5'
13406 5' -44.3 NC_003409.1 + 118858 0.67 0.999981
Target:  5'- cUUGGcuAACACggCUGGAGUgGCgguggGCGGGg -3'
miRNA:   3'- -AAUC--UUGUGaaGACCUUA-UGa----UGUCC- -5'
13406 5' -44.3 NC_003409.1 + 32004 0.67 0.999981
Target:  5'- -gGGAcCGCUgggagUCUGGGAUaACUcGCGGGg -3'
miRNA:   3'- aaUCUuGUGA-----AGACCUUA-UGA-UGUCC- -5'
13406 5' -44.3 NC_003409.1 + 36070 0.67 0.999981
Target:  5'- aUUAGAACGC--CUGuGAccguggACUACAGGa -3'
miRNA:   3'- -AAUCUUGUGaaGAC-CUua----UGAUGUCC- -5'
13406 5' -44.3 NC_003409.1 + 89816 0.67 0.999963
Target:  5'- cUAGGGCugUUCUGGAuguuuuuaauGUggcacaauaucGCaUACAGGg -3'
miRNA:   3'- aAUCUUGugAAGACCU----------UA-----------UG-AUGUCC- -5'
13406 5' -44.3 NC_003409.1 + 131830 0.69 0.999796
Target:  5'- -gAGAugGCc-CUGGccgGCUGCAGGg -3'
miRNA:   3'- aaUCUugUGaaGACCuuaUGAUGUCC- -5'
13406 5' -44.3 NC_003409.1 + 13852 0.7 0.999454
Target:  5'- -aAGAGCAgUcaggucCUGGAccucAUACUGCGGGa -3'
miRNA:   3'- aaUCUUGUgAa-----GACCU----UAUGAUGUCC- -5'
13406 5' -44.3 NC_003409.1 + 24659 0.7 0.999146
Target:  5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 24619 0.7 0.999146
Target:  5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 24579 0.7 0.999146
Target:  5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 24539 0.7 0.999146
Target:  5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 24499 0.7 0.999146
Target:  5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 24459 0.7 0.999146
Target:  5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 24699 0.7 0.999146
Target:  5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 6710 0.71 0.998699
Target:  5'- --uGGACACUaaaagUCUGGcccucACUACAGGg -3'
miRNA:   3'- aauCUUGUGA-----AGACCuua--UGAUGUCC- -5'
13406 5' -44.3 NC_003409.1 + 6822 0.71 0.998409
Target:  5'- aUUGGAGCACUUUUGGAAaACgugGCuGa -3'
miRNA:   3'- -AAUCUUGUGAAGACCUUaUGa--UGuCc -5'
13406 5' -44.3 NC_003409.1 + 24737 0.72 0.996647
Target:  5'- -gGGGGCGCgccggggcucCUGGggUGCUGcCGGGg -3'
miRNA:   3'- aaUCUUGUGaa--------GACCuuAUGAU-GUCC- -5'
13406 5' -44.3 NC_003409.1 + 118491 0.72 0.99529
Target:  5'- -gGGGAC-CgcgCcGGggUACUGCAGGg -3'
miRNA:   3'- aaUCUUGuGaa-GaCCuuAUGAUGUCC- -5'
13406 5' -44.3 NC_003409.1 + 109790 0.76 0.965913
Target:  5'- ------gGCUUCUGGAcUGCUGCGGGu -3'
miRNA:   3'- aaucuugUGAAGACCUuAUGAUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.