miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13408 3' -54.5 NC_003409.1 + 5995 0.66 0.937934
Target:  5'- aUCUGGAGAugacaaCCCCACUgGCccCAGUAcGUGg -3'
miRNA:   3'- -GGGCCUCU------GGGGUGA-CGu-GUCAU-UAC- -5'
13408 3' -54.5 NC_003409.1 + 99671 0.66 0.937934
Target:  5'- uUuuGGcuACCUCGCUGCGCAGcacGUGu -3'
miRNA:   3'- -GggCCucUGGGGUGACGUGUCau-UAC- -5'
13408 3' -54.5 NC_003409.1 + 133592 0.66 0.932948
Target:  5'- gCCCuGGGACCCCGugcGCACAGc---- -3'
miRNA:   3'- -GGGcCUCUGGGGUga-CGUGUCauuac -5'
13408 3' -54.5 NC_003409.1 + 109269 0.66 0.927717
Target:  5'- uUCCGGgcAGACCCCGuCcagGCACGGg---- -3'
miRNA:   3'- -GGGCC--UCUGGGGU-Ga--CGUGUCauuac -5'
13408 3' -54.5 NC_003409.1 + 111999 0.66 0.92224
Target:  5'- gCCGGAugcagggccuGGCCUCGaagGCACGGUGAa- -3'
miRNA:   3'- gGGCCU----------CUGGGGUga-CGUGUCAUUac -5'
13408 3' -54.5 NC_003409.1 + 73033 0.67 0.916518
Target:  5'- gCUGGAGgcaggcucACCCCGCUGCAugcggcuguCAGaAAUGc -3'
miRNA:   3'- gGGCCUC--------UGGGGUGACGU---------GUCaUUAC- -5'
13408 3' -54.5 NC_003409.1 + 100672 0.67 0.910552
Target:  5'- gCCCGGGacgaGCCCCG-UGCACAcGUAGg- -3'
miRNA:   3'- -GGGCCUc---UGGGGUgACGUGU-CAUUac -5'
13408 3' -54.5 NC_003409.1 + 6179 0.67 0.910552
Target:  5'- uCCCcGAGAaguaUCCCAgguUUGCACAGUGAa- -3'
miRNA:   3'- -GGGcCUCU----GGGGU---GACGUGUCAUUac -5'
13408 3' -54.5 NC_003409.1 + 114972 0.67 0.909942
Target:  5'- aCCCGGAGgagagccucgguaACCCCAUaaUGaCACAGa---- -3'
miRNA:   3'- -GGGCCUC-------------UGGGGUG--AC-GUGUCauuac -5'
13408 3' -54.5 NC_003409.1 + 65696 0.67 0.89391
Target:  5'- gUgGGAGACCCCACgcagacuaugcaagGCACGGc---- -3'
miRNA:   3'- gGgCCUCUGGGGUGa-------------CGUGUCauuac -5'
13408 3' -54.5 NC_003409.1 + 52076 0.67 0.891207
Target:  5'- uCCCGGAG-CCUCGa-GCGCcauGUGGUGa -3'
miRNA:   3'- -GGGCCUCuGGGGUgaCGUGu--CAUUAC- -5'
13408 3' -54.5 NC_003409.1 + 128494 0.67 0.891207
Target:  5'- aCCCaGGAGcAgUUCACUG-ACAGUGAUGg -3'
miRNA:   3'- -GGG-CCUC-UgGGGUGACgUGUCAUUAC- -5'
13408 3' -54.5 NC_003409.1 + 65498 0.68 0.884287
Target:  5'- gCUGGAcACCCCGCUaUACAGaAAUGg -3'
miRNA:   3'- gGGCCUcUGGGGUGAcGUGUCaUUAC- -5'
13408 3' -54.5 NC_003409.1 + 32115 0.68 0.884287
Target:  5'- cCCUGGGGcGCCgaCGCgGCACAGUGGc- -3'
miRNA:   3'- -GGGCCUC-UGGg-GUGaCGUGUCAUUac -5'
13408 3' -54.5 NC_003409.1 + 34548 0.68 0.877138
Target:  5'- cCCCGGGGACCCuCACUucuccGUugACAGg---- -3'
miRNA:   3'- -GGGCCUCUGGG-GUGA-----CG--UGUCauuac -5'
13408 3' -54.5 NC_003409.1 + 84007 0.68 0.869763
Target:  5'- cCCCGcGAGACUuuGCggcgagGUGCAGUAAUu -3'
miRNA:   3'- -GGGC-CUCUGGggUGa-----CGUGUCAUUAc -5'
13408 3' -54.5 NC_003409.1 + 72203 0.68 0.86217
Target:  5'- cCCUGGAaucaGaACCCCagaccgcggACUGCACAG-AGUGg -3'
miRNA:   3'- -GGGCCU----C-UGGGG---------UGACGUGUCaUUAC- -5'
13408 3' -54.5 NC_003409.1 + 21114 0.68 0.86217
Target:  5'- gCCCGGAGAgacaCCCCucaACU-CGCAGUGc-- -3'
miRNA:   3'- -GGGCCUCU----GGGG---UGAcGUGUCAUuac -5'
13408 3' -54.5 NC_003409.1 + 134326 0.68 0.86217
Target:  5'- cCCCGGGGACaCCCuCUGUAguCAGg---- -3'
miRNA:   3'- -GGGCCUCUG-GGGuGACGU--GUCauuac -5'
13408 3' -54.5 NC_003409.1 + 6538 0.72 0.665886
Target:  5'- cCCCGccuGGCCCaCugUGCuCAGUAAUGa -3'
miRNA:   3'- -GGGCcu-CUGGG-GugACGuGUCAUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.