miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13408 5' -53 NC_003409.1 + 109099 0.66 0.966718
Target:  5'- uGUCCCggagccggcUGCGUcuGGCCGAUGuguAGGUaUCg -3'
miRNA:   3'- -CAGGG---------AUGCGuuCCGGCUAC---UCUA-AG- -5'
13408 5' -53 NC_003409.1 + 43681 0.66 0.959727
Target:  5'- cGUUagCUACGgAAGGgCGAUGAGAa-- -3'
miRNA:   3'- -CAGg-GAUGCgUUCCgGCUACUCUaag -5'
13408 5' -53 NC_003409.1 + 91728 0.66 0.959727
Target:  5'- -cCCCUGCaauGCAAGGUa-AUGAGGUUa -3'
miRNA:   3'- caGGGAUG---CGUUCCGgcUACUCUAAg -5'
13408 5' -53 NC_003409.1 + 80917 0.66 0.955878
Target:  5'- uUCCCUGCGUGAGGCCa--------- -3'
miRNA:   3'- cAGGGAUGCGUUCCGGcuacucuaag -5'
13408 5' -53 NC_003409.1 + 108485 0.66 0.951786
Target:  5'- -cUCCUGCaGCGAgcGGUCGAUGAGcugUCa -3'
miRNA:   3'- caGGGAUG-CGUU--CCGGCUACUCua-AG- -5'
13408 5' -53 NC_003409.1 + 133446 0.67 0.932918
Target:  5'- gGUCCCaggGCcgguucggugGCAuacAGGCCGGUGAGGg-- -3'
miRNA:   3'- -CAGGGa--UG----------CGU---UCCGGCUACUCUaag -5'
13408 5' -53 NC_003409.1 + 32601 0.67 0.927564
Target:  5'- gGUCCUgggACGCAAGGUuccUGcgGAGGUg- -3'
miRNA:   3'- -CAGGGa--UGCGUUCCG---GCuaCUCUAag -5'
13408 5' -53 NC_003409.1 + 101724 0.67 0.927014
Target:  5'- uGUUCC-ACGCAugugaacAGGCCGAUGA--UUCc -3'
miRNA:   3'- -CAGGGaUGCGU-------UCCGGCUACUcuAAG- -5'
13408 5' -53 NC_003409.1 + 87387 0.68 0.903588
Target:  5'- -aCCCggGCGCGGGGgCGcugggcgguUGAGGUUCg -3'
miRNA:   3'- caGGGa-UGCGUUCCgGCu--------ACUCUAAG- -5'
13408 5' -53 NC_003409.1 + 110079 0.69 0.875611
Target:  5'- cGUUCCUGCGCcuGGCCGAccAGGc-- -3'
miRNA:   3'- -CAGGGAUGCGuuCCGGCUacUCUaag -5'
13408 5' -53 NC_003409.1 + 52029 0.71 0.780822
Target:  5'- -aCCCUGCGCGgagaAGGCCGGUcAGGa-- -3'
miRNA:   3'- caGGGAUGCGU----UCCGGCUAcUCUaag -5'
13408 5' -53 NC_003409.1 + 104812 0.72 0.730266
Target:  5'- aGUCCCUGCGCAauggugccucacuAGGCgCGG-GGGAUa- -3'
miRNA:   3'- -CAGGGAUGCGU-------------UCCG-GCUaCUCUAag -5'
13408 5' -53 NC_003409.1 + 84258 1.1 0.00366
Target:  5'- gGUCCCUACGCAAGGCCGAUGAGAUUCg -3'
miRNA:   3'- -CAGGGAUGCGUUCCGGCUACUCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.