Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1341 | 3' | -51.6 | NC_001335.1 | + | 30056 | 0.66 | 0.887658 |
Target: 5'- cGAaguUCAUCuCCGaGGAcCAGgcCGAGAACg -3' miRNA: 3'- aCU---AGUAGuGGC-CCUuGUC--GCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 16462 | 0.66 | 0.887658 |
Target: 5'- cGGUCAgCAUCGGGccgAGCuGCuGGAACa -3' miRNA: 3'- aCUAGUaGUGGCCC---UUGuCGcUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 22827 | 0.66 | 0.87992 |
Target: 5'- --cUCGUCugCGGGGuuGGUGcGGACg -3' miRNA: 3'- acuAGUAGugGCCCUugUCGCuCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 7820 | 0.66 | 0.87992 |
Target: 5'- aGGUCGaccuggCACCGGuuccauuccuGCGGUGAGAGCc -3' miRNA: 3'- aCUAGUa-----GUGGCCcu--------UGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 10812 | 0.66 | 0.871094 |
Target: 5'- aGAgaaccCACCuGGGGuucgagggacuacGCAGCGAGGGCg -3' miRNA: 3'- aCUagua-GUGG-CCCU-------------UGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 26581 | 0.66 | 0.863634 |
Target: 5'- gGAUCA--GCCGGGGACcgAGCc-GAACg -3' miRNA: 3'- aCUAGUagUGGCCCUUG--UCGcuCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 16914 | 0.66 | 0.863634 |
Target: 5'- -aGUCAgCGCCGGcauCAGCGAGAc- -3' miRNA: 3'- acUAGUaGUGGCCcuuGUCGCUCUug -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 44642 | 0.66 | 0.8551 |
Target: 5'- --uUCAgaggCuCCGGGAucACGGCGAGuACa -3' miRNA: 3'- acuAGUa---GuGGCCCU--UGUCGCUCuUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 42389 | 0.66 | 0.8551 |
Target: 5'- cUGGuUCAUCAgCCGGGugccgcGCAGCuuGAGGAUc -3' miRNA: 3'- -ACU-AGUAGU-GGCCCu-----UGUCG--CUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 2538 | 0.66 | 0.8551 |
Target: 5'- aGAaaUCAgcCGCCGaGGGcguagcccgACGGCGGGAACu -3' miRNA: 3'- aCU--AGUa-GUGGC-CCU---------UGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 16663 | 0.67 | 0.846316 |
Target: 5'- -aGUUcgCGCCGGcguuGGACAGCGucaGGAACg -3' miRNA: 3'- acUAGuaGUGGCC----CUUGUCGC---UCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 37491 | 0.67 | 0.837292 |
Target: 5'- aGAUCAUCAaCGG--ACAGCGAGcccagGACu -3' miRNA: 3'- aCUAGUAGUgGCCcuUGUCGCUC-----UUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 12327 | 0.67 | 0.836377 |
Target: 5'- uUGA-CAUcCACCGGGAGgGGgcuccuuCGGGAGCc -3' miRNA: 3'- -ACUaGUA-GUGGCCCUUgUC-------GCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 22936 | 0.68 | 0.78994 |
Target: 5'- gGAccCAUaGCCGGGugugcgaaccucccuGCGGCGGGAACa -3' miRNA: 3'- aCUa-GUAgUGGCCCu--------------UGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 31051 | 0.68 | 0.788925 |
Target: 5'- gGAUC-UCGCCGaGAacuACGGCGuGAACc -3' miRNA: 3'- aCUAGuAGUGGCcCU---UGUCGCuCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 32333 | 0.68 | 0.768274 |
Target: 5'- aGGUCA--GCCaGGGGGCAGCGA-AGCc -3' miRNA: 3'- aCUAGUagUGG-CCCUUGUCGCUcUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 32694 | 0.68 | 0.747024 |
Target: 5'- gGAUCcgCGCCGGccAACGGCGGcGGCg -3' miRNA: 3'- aCUAGuaGUGGCCc-UUGUCGCUcUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 37812 | 0.69 | 0.724177 |
Target: 5'- cGAUaCAUCgACUGGGAugGugcucacGUGAGAACg -3' miRNA: 3'- aCUA-GUAG-UGGCCCUugU-------CGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 3606 | 0.69 | 0.70313 |
Target: 5'- uUGAaguUCAgugucCACgcaGGGAACAGCGAGAc- -3' miRNA: 3'- -ACU---AGUa----GUGg--CCCUUGUCGCUCUug -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 7883 | 0.7 | 0.669387 |
Target: 5'- gUGAUCcgGUCACCGcGcuGCAGCG-GAGCg -3' miRNA: 3'- -ACUAG--UAGUGGC-CcuUGUCGCuCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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