miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13412 5' -63.2 NC_003409.1 + 90271 1.07 0.000882
Target:  5'- cUACACCCGCCCCGACAGCCGAGGCGGc -3'
miRNA:   3'- -AUGUGGGCGGGGCUGUCGGCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 90435 0.75 0.161472
Target:  5'- ----gCCGCCUCGGCuGUCGGGGCGGg -3'
miRNA:   3'- augugGGCGGGGCUGuCGGCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 116580 0.75 0.169507
Target:  5'- gGCGCUucgCGCCCCgGGCGGgaccgaCCGAGGCGGg -3'
miRNA:   3'- aUGUGG---GCGGGG-CUGUC------GGCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24573 0.72 0.259101
Target:  5'- aGCACCCcaggaGCCCCGGCGcGCCacccuccccgGAGGgGGa -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGU-CGG----------CUCCgCC- -5'
13412 5' -63.2 NC_003409.1 + 110422 0.72 0.277342
Target:  5'- -cCugCCGCCuaCCGACAucGCCagaaGAGGCGGg -3'
miRNA:   3'- auGugGGCGG--GGCUGU--CGG----CUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 16630 0.71 0.296593
Target:  5'- uUACGCUgGCCCCGcGCGGCCGccAGGUa- -3'
miRNA:   3'- -AUGUGGgCGGGGC-UGUCGGC--UCCGcc -5'
13412 5' -63.2 NC_003409.1 + 127815 0.69 0.408122
Target:  5'- aGCGCCCGCCCacuuguuucgGGCGGCCcguaAGGCa- -3'
miRNA:   3'- aUGUGGGCGGGg---------CUGUCGGc---UCCGcc -5'
13412 5' -63.2 NC_003409.1 + 55279 0.68 0.4684
Target:  5'- aACAgUCGgCCCGACAaaaaGAGGCGGg -3'
miRNA:   3'- aUGUgGGCgGGGCUGUcgg-CUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 14066 0.68 0.4684
Target:  5'- -uCGCCUGCCCCGAaauaagcuUGGCCGcGGCc- -3'
miRNA:   3'- auGUGGGCGGGGCU--------GUCGGCuCCGcc -5'
13412 5' -63.2 NC_003409.1 + 37472 0.68 0.4684
Target:  5'- aGCGCuCUGCCCgGGCA-CCuuGGCGGa -3'
miRNA:   3'- aUGUG-GGCGGGgCUGUcGGcuCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 18327 0.68 0.4684
Target:  5'- -cUACCCGCCaauggUCGACAGCCc--GCGGg -3'
miRNA:   3'- auGUGGGCGG-----GGCUGUCGGcucCGCC- -5'
13412 5' -63.2 NC_003409.1 + 26450 0.68 0.4684
Target:  5'- gACGCCauCUCUG-CAGCUGGGGUGGa -3'
miRNA:   3'- aUGUGGgcGGGGCuGUCGGCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24273 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24353 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 109343 0.68 0.477384
Target:  5'- aGCACgCCGCCCCgGACGcGUacccaaggGAGGUGGc -3'
miRNA:   3'- aUGUG-GGCGGGG-CUGU-CGg-------CUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24513 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24473 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24433 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24393 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24313 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.