miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13412 5' -63.2 NC_003409.1 + 24353 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 90271 1.07 0.000882
Target:  5'- cUACACCCGCCCCGACAGCCGAGGCGGc -3'
miRNA:   3'- -AUGUGGGCGGGGCUGUCGGCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24573 0.72 0.259101
Target:  5'- aGCACCCcaggaGCCCCGGCGcGCCacccuccccgGAGGgGGa -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGU-CGG----------CUCCgCC- -5'
13412 5' -63.2 NC_003409.1 + 110422 0.72 0.277342
Target:  5'- -cCugCCGCCuaCCGACAucGCCagaaGAGGCGGg -3'
miRNA:   3'- auGugGGCGG--GGCUGU--CGG----CUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 16630 0.71 0.296593
Target:  5'- uUACGCUgGCCCCGcGCGGCCGccAGGUa- -3'
miRNA:   3'- -AUGUGGgCGGGGC-UGUCGGC--UCCGcc -5'
13412 5' -63.2 NC_003409.1 + 18327 0.68 0.4684
Target:  5'- -cUACCCGCCaauggUCGACAGCCc--GCGGg -3'
miRNA:   3'- auGUGGGCGG-----GGCUGUCGGcucCGCC- -5'
13412 5' -63.2 NC_003409.1 + 26450 0.68 0.4684
Target:  5'- gACGCCauCUCUG-CAGCUGGGGUGGa -3'
miRNA:   3'- aUGUGGgcGGGGCuGUCGGCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 37472 0.68 0.4684
Target:  5'- aGCGCuCUGCCCgGGCA-CCuuGGCGGa -3'
miRNA:   3'- aUGUG-GGCGGGgCUGUcGGcuCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24273 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 91592 0.67 0.523494
Target:  5'- gACACCCccuuGCCuuGGCAGCUGA-GUGa -3'
miRNA:   3'- aUGUGGG----CGGggCUGUCGGCUcCGCc -5'
13412 5' -63.2 NC_003409.1 + 35546 0.67 0.504826
Target:  5'- gUGCcCaCCGUCCCGACuagcaAGCCGuGGCa- -3'
miRNA:   3'- -AUGuG-GGCGGGGCUG-----UCGGCuCCGcc -5'
13412 5' -63.2 NC_003409.1 + 21968 0.67 0.4956
Target:  5'- aACACCCcaaaaaauccacGCCCCcguGACcGCaGGGGCGGu -3'
miRNA:   3'- aUGUGGG------------CGGGG---CUGuCGgCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24393 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 82474 0.67 0.514125
Target:  5'- cACGCgaCCGCCUacaauaCGGCAGaacaacaCGGGGCGGa -3'
miRNA:   3'- aUGUG--GGCGGG------GCUGUCg------GCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24433 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 109343 0.68 0.477384
Target:  5'- aGCACgCCGCCCCgGACGcGUacccaaggGAGGUGGc -3'
miRNA:   3'- aUGUG-GGCGGGG-CUGU-CGg-------CUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 108995 0.67 0.514125
Target:  5'- cGCGCCCGgCCUGcguccCAGCC--GGCGGc -3'
miRNA:   3'- aUGUGGGCgGGGCu----GUCGGcuCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 60201 0.66 0.59061
Target:  5'- aAUACgCGCCCCGGgcagaAGCCaGAGGUa- -3'
miRNA:   3'- aUGUGgGCGGGGCUg----UCGG-CUCCGcc -5'
13412 5' -63.2 NC_003409.1 + 24473 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24513 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.