miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13414 5' -50.3 NC_003409.1 + 88344 0.66 0.992796
Target:  5'- --aGGCGcCAUCGg--GGCUGAggggucGCCCu -3'
miRNA:   3'- uaaCCGUaGUAGUugaCCGACU------UGGG- -5'
13414 5' -50.3 NC_003409.1 + 40144 0.66 0.992796
Target:  5'- -gUGGCcgCGUaCGACUGGCUuGGAgUg -3'
miRNA:   3'- uaACCGuaGUA-GUUGACCGA-CUUgGg -5'
13414 5' -50.3 NC_003409.1 + 102257 0.66 0.991682
Target:  5'- uUUGGCugugCGUCAGCU-GCUGcuuGCCg -3'
miRNA:   3'- uAACCGua--GUAGUUGAcCGACu--UGGg -5'
13414 5' -50.3 NC_003409.1 + 78276 0.66 0.991682
Target:  5'- --gGGCAgCcgUGGCUGGCgcAGCCCg -3'
miRNA:   3'- uaaCCGUaGuaGUUGACCGacUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 9083 0.66 0.990435
Target:  5'- --gGGCA-CGUCuGCUccaGGUUGAACCg -3'
miRNA:   3'- uaaCCGUaGUAGuUGA---CCGACUUGGg -5'
13414 5' -50.3 NC_003409.1 + 27122 0.66 0.987506
Target:  5'- --aGGCAgccgcugCAUCAGCUGcCU-AACCCa -3'
miRNA:   3'- uaaCCGUa------GUAGUUGACcGAcUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 23639 0.66 0.987506
Target:  5'- --aGGUAUaccCAGgUGGgUGAACCCa -3'
miRNA:   3'- uaaCCGUAguaGUUgACCgACUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 50062 0.67 0.979624
Target:  5'- --aGGCGUCcgguACUGGCgUGGGCgCCg -3'
miRNA:   3'- uaaCCGUAGuaguUGACCG-ACUUG-GG- -5'
13414 5' -50.3 NC_003409.1 + 52121 0.67 0.979624
Target:  5'- -gUGGcCGUCAggaagaCGACUGGCUGccgauACCa -3'
miRNA:   3'- uaACC-GUAGUa-----GUUGACCGACu----UGGg -5'
13414 5' -50.3 NC_003409.1 + 34283 0.67 0.977174
Target:  5'- -aUGGCGUUGUCcgugaGGCUGAugaaccacgGCCCa -3'
miRNA:   3'- uaACCGUAGUAGuuga-CCGACU---------UGGG- -5'
13414 5' -50.3 NC_003409.1 + 108094 0.68 0.968533
Target:  5'- -gUGGCGUgugugCGUCGGCUcGUUGGGCCUc -3'
miRNA:   3'- uaACCGUA-----GUAGUUGAcCGACUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 79047 0.68 0.968533
Target:  5'- -aUGGCGUCAgaCGACUcGGUaauaUGGGCCUc -3'
miRNA:   3'- uaACCGUAGUa-GUUGA-CCG----ACUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 106836 0.68 0.968533
Target:  5'- -aUGGCgGUCuUCAGCcGGgaGAACCUc -3'
miRNA:   3'- uaACCG-UAGuAGUUGaCCgaCUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 123661 0.68 0.968533
Target:  5'- ---aGCGUCGUCGA-UGGgaGAACCUg -3'
miRNA:   3'- uaacCGUAGUAGUUgACCgaCUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 53718 0.68 0.965195
Target:  5'- uGUUGcGCA-CAUCAGC-GaGCUGGACCg -3'
miRNA:   3'- -UAAC-CGUaGUAGUUGaC-CGACUUGGg -5'
13414 5' -50.3 NC_003409.1 + 87288 0.68 0.965195
Target:  5'- --cGGCGUgAcCAACUGGUgGGugCCa -3'
miRNA:   3'- uaaCCGUAgUaGUUGACCGaCUugGG- -5'
13414 5' -50.3 NC_003409.1 + 128017 0.68 0.961615
Target:  5'- -gUGGCGU--UCAuCUGGCU-AGCCCu -3'
miRNA:   3'- uaACCGUAguAGUuGACCGAcUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 87633 0.69 0.953708
Target:  5'- --gGGCAgCAggauUCAGCUGGCUgcuagGAAUCCc -3'
miRNA:   3'- uaaCCGUaGU----AGUUGACCGA-----CUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 87558 0.69 0.944769
Target:  5'- -gUGGCGcCAgaggugCAccCUGGCUGAACUCa -3'
miRNA:   3'- uaACCGUaGUa-----GUu-GACCGACUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 32296 0.69 0.939903
Target:  5'- -cUGGCAUCca-GGCUGGC-GGACaCCu -3'
miRNA:   3'- uaACCGUAGuagUUGACCGaCUUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.