Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 99480 | 1.12 | 0.001394 |
Target: 5'- cUGAGCGCAGUAUUGGCGUGGCGCAGCa -3' miRNA: 3'- -ACUCGCGUCAUAACCGCACCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 126384 | 0.79 | 0.237576 |
Target: 5'- gGAGaUGUAGgcgGUUGGCGUGGCGgAGUa -3' miRNA: 3'- aCUC-GCGUCa--UAACCGCACCGCgUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 52065 | 0.74 | 0.460401 |
Target: 5'- cGAGCGCcaug-UGGUgaGUGGCGCGGUc -3' miRNA: 3'- aCUCGCGucauaACCG--CACCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 78274 | 0.73 | 0.479466 |
Target: 5'- cGGG-GCAGccgUGGC-UGGCGCAGCc -3' miRNA: 3'- aCUCgCGUCauaACCGcACCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 54635 | 0.72 | 0.528705 |
Target: 5'- -uGGCGCAcccuuuUAUUGGCGUGGUGCAc- -3' miRNA: 3'- acUCGCGUc-----AUAACCGCACCGCGUcg -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 113533 | 0.72 | 0.528705 |
Target: 5'- -aGGCGCAG-AUUuGUGcGGCGCAGCa -3' miRNA: 3'- acUCGCGUCaUAAcCGCaCCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 87390 | 0.71 | 0.631639 |
Target: 5'- cGGGCGCGGg---GGCGcUGG-GCGGUu -3' miRNA: 3'- aCUCGCGUCauaaCCGC-ACCgCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 123418 | 0.69 | 0.73142 |
Target: 5'- cGAGgGCGGguUAUUGGCaguugccauauagaGUGGCG-AGCg -3' miRNA: 3'- aCUCgCGUC--AUAACCG--------------CACCGCgUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 133308 | 0.69 | 0.723389 |
Target: 5'- aGGGCGUugccaggAGUggUGGCGaUGGUGC-GCa -3' miRNA: 3'- aCUCGCG-------UCAuaACCGC-ACCGCGuCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 25927 | 0.68 | 0.773485 |
Target: 5'- cGuuCGCGGU--UGGCc-GGCGCGGCg -3' miRNA: 3'- aCucGCGUCAuaACCGcaCCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 20917 | 0.68 | 0.754174 |
Target: 5'- cGGGUGUu---UUGGCGaGGCGUAGUg -3' miRNA: 3'- aCUCGCGucauAACCGCaCCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 109728 | 0.68 | 0.76389 |
Target: 5'- aGAcGCGCuuc--UGGCGUGGCGaaguGGCg -3' miRNA: 3'- aCU-CGCGucauaACCGCACCGCg---UCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 114978 | 0.68 | 0.773485 |
Target: 5'- aGAGaCGCGGgggugGGUGUGGaGCAGg -3' miRNA: 3'- aCUC-GCGUCauaa-CCGCACCgCGUCg -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 50062 | 0.68 | 0.782948 |
Target: 5'- -aGGCGUccGGUAcUGGCGUgGGCGCcGUu -3' miRNA: 3'- acUCGCG--UCAUaACCGCA-CCGCGuCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 93665 | 0.68 | 0.782948 |
Target: 5'- cUGGGCGguGgGUU-GUGUGG-GCGGCg -3' miRNA: 3'- -ACUCGCguCaUAAcCGCACCgCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 41990 | 0.68 | 0.782948 |
Target: 5'- gUGAGCGa-----UGGCacGGCGCAGCg -3' miRNA: 3'- -ACUCGCgucauaACCGcaCCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 131053 | 0.68 | 0.779179 |
Target: 5'- -cAGCGcCAGgacccauccccUGGCGcUGGCGUAGCu -3' miRNA: 3'- acUCGC-GUCaua--------ACCGC-ACCGCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 109913 | 0.68 | 0.773485 |
Target: 5'- cGAGCGCcugGUcGGCcaGGCGCAGg -3' miRNA: 3'- aCUCGCGucaUAaCCGcaCCGCGUCg -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 80417 | 0.68 | 0.801445 |
Target: 5'- cGAGCGguGcguuUAUUGGUGcGG-GCAGUc -3' miRNA: 3'- aCUCGCguC----AUAACCGCaCCgCGUCG- -5' |
|||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 87167 | 0.68 | 0.782948 |
Target: 5'- gUGGGUGguGcgccGGCGgagGGCGUGGCc -3' miRNA: 3'- -ACUCGCguCauaaCCGCa--CCGCGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home