Results 21 - 40 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 123902 | 0.67 | 0.999679 |
Target: 5'- gGGUG--GGGCaagcagGACACgggGCCUGCCu -3' miRNA: 3'- -CCAUuuUCUGgg----UUGUGaa-CGGAUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 109861 | 0.67 | 0.999679 |
Target: 5'- cGGUGGc--GCCCGGCGCaacacUGCC-ACCg -3' miRNA: 3'- -CCAUUuucUGGGUUGUGa----ACGGaUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 77610 | 0.67 | 0.999679 |
Target: 5'- cGGcu--GGGCUCAGCGCcagGCCUucGCCc -3' miRNA: 3'- -CCauuuUCUGGGUUGUGaa-CGGA--UGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 133199 | 0.67 | 0.999679 |
Target: 5'- uGGUGAGGcACCUgcaGGCGCUggcGCCgcggACCg -3' miRNA: 3'- -CCAUUUUcUGGG---UUGUGAa--CGGa---UGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 44871 | 0.67 | 0.999671 |
Target: 5'- ------cGACCC-GCAUcugcugccucccuUUGCCUACCa -3' miRNA: 3'- ccauuuuCUGGGuUGUG-------------AACGGAUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 24391 | 0.67 | 0.999593 |
Target: 5'- gGGUAAauccaaGAGAUCCGuccCACgUGCC-GCCg -3' miRNA: 3'- -CCAUU------UUCUGGGUu--GUGaACGGaUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 86997 | 0.67 | 0.999593 |
Target: 5'- uGGcGAAAGGCCCAGaguucCACUUGUUagUACa -3' miRNA: 3'- -CCaUUUUCUGGGUU-----GUGAACGG--AUGg -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 46764 | 0.67 | 0.999593 |
Target: 5'- uGGUGgcGGGGGcCCCAGCAa--GCCUGgCa -3' miRNA: 3'- -CCAU--UUUCU-GGGUUGUgaaCGGAUgG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 124516 | 0.67 | 0.999584 |
Target: 5'- cGGUGGAAGAgCCCAuaaucuuGCACggGUCgucauCCg -3' miRNA: 3'- -CCAUUUUCU-GGGU-------UGUGaaCGGau---GG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 133292 | 0.68 | 0.999489 |
Target: 5'- cGGUGcgcaucuuGGAGACCCugaaGCUgguccagcgGCUUGCCa -3' miRNA: 3'- -CCAU--------UUUCUGGGuug-UGAa--------CGGAUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 40581 | 0.68 | 0.999361 |
Target: 5'- aGUAGAGGGCgCGGCGC--GCCUGUCg -3' miRNA: 3'- cCAUUUUCUGgGUUGUGaaCGGAUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 59121 | 0.68 | 0.999361 |
Target: 5'- ---cGAGGACCCAAUACcaGUCcgACCa -3' miRNA: 3'- ccauUUUCUGGGUUGUGaaCGGa-UGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 21696 | 0.68 | 0.999347 |
Target: 5'- uGGUAAccGAgaCAGCACUUGUCcggucuaUGCCa -3' miRNA: 3'- -CCAUUuuCUggGUUGUGAACGG-------AUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 97722 | 0.68 | 0.999207 |
Target: 5'- -cUGAcAGACCaGGCACUcgggGUCUGCCg -3' miRNA: 3'- ccAUUuUCUGGgUUGUGAa---CGGAUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 57370 | 0.68 | 0.999207 |
Target: 5'- aGGcc-AAGAUCCAACccaGCaUGCCUGCg -3' miRNA: 3'- -CCauuUUCUGGGUUG---UGaACGGAUGg -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 65698 | 0.68 | 0.999207 |
Target: 5'- gGGUGGGAGACCCcACGCagacuaUGCaagGCa -3' miRNA: 3'- -CCAUUUUCUGGGuUGUGa-----ACGga-UGg -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 85330 | 0.68 | 0.999207 |
Target: 5'- cGGUGGcuc-CCCGGCAUagcugUGCUUACCa -3' miRNA: 3'- -CCAUUuucuGGGUUGUGa----ACGGAUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 122066 | 0.68 | 0.999207 |
Target: 5'- aGGU-GAAGGCCCAuuaggguuuGCACUUggcgcuguagGUCUACUc -3' miRNA: 3'- -CCAuUUUCUGGGU---------UGUGAA----------CGGAUGG- -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 64921 | 0.68 | 0.999022 |
Target: 5'- aGGUc--AGACUCuACACUgcaGCCUGCg -3' miRNA: 3'- -CCAuuuUCUGGGuUGUGAa--CGGAUGg -5' |
|||||||
13423 | 5' | -46.4 | NC_003409.1 | + | 72456 | 0.68 | 0.999022 |
Target: 5'- --gAGAAGACCCuauAC-CUUGCaaagACCa -3' miRNA: 3'- ccaUUUUCUGGGu--UGuGAACGga--UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home