miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13423 5' -46.4 NC_003409.1 + 60153 0.67 0.999748
Target:  5'- cGGcGGGAGAgCCAAucugaugcCAC-UGCCUAUCg -3'
miRNA:   3'- -CCaUUUUCUgGGUU--------GUGaACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 64771 0.71 0.989577
Target:  5'- uGUAGAGucuGACCUcugacauaagAAUACUUGCCUugCa -3'
miRNA:   3'- cCAUUUU---CUGGG----------UUGUGAACGGAugG- -5'
13423 5' -46.4 NC_003409.1 + 64921 0.68 0.999022
Target:  5'- aGGUc--AGACUCuACACUgcaGCCUGCg -3'
miRNA:   3'- -CCAuuuUCUGGGuUGUGAa--CGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 65698 0.68 0.999207
Target:  5'- gGGUGGGAGACCCcACGCagacuaUGCaagGCa -3'
miRNA:   3'- -CCAUUUUCUGGGuUGUGa-----ACGga-UGg -5'
13423 5' -46.4 NC_003409.1 + 72456 0.68 0.999022
Target:  5'- --gAGAAGACCCuauAC-CUUGCaaagACCa -3'
miRNA:   3'- ccaUUUUCUGGGu--UGuGAACGga--UGG- -5'
13423 5' -46.4 NC_003409.1 + 77444 0.76 0.899531
Target:  5'- cGGgcGAAGGCCUGGCGCUgaGCCcaGCCg -3'
miRNA:   3'- -CCauUUUCUGGGUUGUGAa-CGGa-UGG- -5'
13423 5' -46.4 NC_003409.1 + 77610 0.67 0.999679
Target:  5'- cGGcu--GGGCUCAGCGCcagGCCUucGCCc -3'
miRNA:   3'- -CCauuuUCUGGGUUGUGaa-CGGA--UGG- -5'
13423 5' -46.4 NC_003409.1 + 79229 0.74 0.9548
Target:  5'- gGGggGGAGGCCCAAaucuaucuCUUGCC-GCCa -3'
miRNA:   3'- -CCauUUUCUGGGUUgu------GAACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 83873 0.67 0.999804
Target:  5'- gGGgcguGGGGCUCua-ACUUGCCaACCg -3'
miRNA:   3'- -CCauu-UUCUGGGuugUGAACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 85330 0.68 0.999207
Target:  5'- cGGUGGcuc-CCCGGCAUagcugUGCUUACCa -3'
miRNA:   3'- -CCAUUuucuGGGUUGUGa----ACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 86997 0.67 0.999593
Target:  5'- uGGcGAAAGGCCCAGaguucCACUUGUUagUACa -3'
miRNA:   3'- -CCaUUUUCUGGGUU-----GUGAACGG--AUGg -5'
13423 5' -46.4 NC_003409.1 + 88116 0.66 0.99993
Target:  5'- -----cAGACCCu-CACUcaucuggugcagGCCUACCg -3'
miRNA:   3'- ccauuuUCUGGGuuGUGAa-----------CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 88849 0.66 0.999934
Target:  5'- -----cAGcCCCcGCGCcccUGCCUGCCg -3'
miRNA:   3'- ccauuuUCuGGGuUGUGa--ACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 90266 0.73 0.969473
Target:  5'- gGGaUGAuGGGCCacggaGACACgagagGCCUACCa -3'
miRNA:   3'- -CC-AUUuUCUGGg----UUGUGaa---CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 92038 0.74 0.962636
Target:  5'- cGGUGggacAGGGGCCU-ACAUUUGCCUAUUc -3'
miRNA:   3'- -CCAU----UUUCUGGGuUGUGAACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 93308 0.7 0.994998
Target:  5'- aGGUGcAGGGCCCAuuACACgUGCacACCc -3'
miRNA:   3'- -CCAUuUUCUGGGU--UGUGaACGgaUGG- -5'
13423 5' -46.4 NC_003409.1 + 96524 0.66 0.999934
Target:  5'- ------cGAUCCGuGCACUUGCaCUACUc -3'
miRNA:   3'- ccauuuuCUGGGU-UGUGAACG-GAUGG- -5'
13423 5' -46.4 NC_003409.1 + 97722 0.68 0.999207
Target:  5'- -cUGAcAGACCaGGCACUcgggGUCUGCCg -3'
miRNA:   3'- ccAUUuUCUGGgUUGUGAa---CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 101034 1.16 0.009448
Target:  5'- aGGUAAAAGACCCAACACUUGCCUACCc -3'
miRNA:   3'- -CCAUUUUCUGGGUUGUGAACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 101884 0.66 0.999932
Target:  5'- uGGUGGcGGAaaauacuCCCAuu-CUUGCCUucACCg -3'
miRNA:   3'- -CCAUUuUCU-------GGGUuguGAACGGA--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.