miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13423 5' -46.4 NC_003409.1 + 5208 0.73 0.966176
Target:  5'- aGUAAAGGgucagaaaaACCgGGCACggcGCCUGCCa -3'
miRNA:   3'- cCAUUUUC---------UGGgUUGUGaa-CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 6466 0.66 0.999934
Target:  5'- aGUuuguGGGCCCAgaagaGC-CUUGCCUuauCCa -3'
miRNA:   3'- cCAuuu-UCUGGGU-----UGuGAACGGAu--GG- -5'
13423 5' -46.4 NC_003409.1 + 15432 0.66 0.999912
Target:  5'- gGGUGAAGccuGACCCAugACaaGCUgACg -3'
miRNA:   3'- -CCAUUUU---CUGGGUugUGaaCGGaUGg -5'
13423 5' -46.4 NC_003409.1 + 21696 0.68 0.999347
Target:  5'- uGGUAAccGAgaCAGCACUUGUCcggucuaUGCCa -3'
miRNA:   3'- -CCAUUuuCUggGUUGUGAACGG-------AUGG- -5'
13423 5' -46.4 NC_003409.1 + 23923 0.66 0.999912
Target:  5'- cGGUGGAugGGugCCAGgAUUauagggGCCUGuCCa -3'
miRNA:   3'- -CCAUUU--UCugGGUUgUGAa-----CGGAU-GG- -5'
13423 5' -46.4 NC_003409.1 + 24391 0.67 0.999593
Target:  5'- gGGUAAauccaaGAGAUCCGuccCACgUGCC-GCCg -3'
miRNA:   3'- -CCAUU------UUCUGGGUu--GUGaACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 27282 0.66 0.999884
Target:  5'- aGGcAGcuGAUgCAGCGgcUGCCUGCCa -3'
miRNA:   3'- -CCaUUuuCUGgGUUGUgaACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 33781 0.68 0.998801
Target:  5'- uGGUAucccugcuGGGACCCAAauuucaGCccggUGCCcUACCg -3'
miRNA:   3'- -CCAUu-------UUCUGGGUUg-----UGa---ACGG-AUGG- -5'
13423 5' -46.4 NC_003409.1 + 34727 0.66 0.99995
Target:  5'- gGGUGugGGGCCCAGaauCUUcccGCCUcuguCCa -3'
miRNA:   3'- -CCAUuuUCUGGGUUgu-GAA---CGGAu---GG- -5'
13423 5' -46.4 NC_003409.1 + 36273 0.69 0.997444
Target:  5'- uGGUAAggcggGAGACCC---GCUgacGUCUGCCa -3'
miRNA:   3'- -CCAUU-----UUCUGGGuugUGAa--CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 40581 0.68 0.999361
Target:  5'- aGUAGAGGGCgCGGCGC--GCCUGUCg -3'
miRNA:   3'- cCAUUUUCUGgGUUGUGaaCGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 42711 0.68 0.999022
Target:  5'- aGUAGGGGGCCCucgAGCGC-UGCCauggaggcgACCu -3'
miRNA:   3'- cCAUUUUCUGGG---UUGUGaACGGa--------UGG- -5'
13423 5' -46.4 NC_003409.1 + 44871 0.67 0.999671
Target:  5'- ------cGACCC-GCAUcugcugccucccuUUGCCUACCa -3'
miRNA:   3'- ccauuuuCUGGGuUGUG-------------AACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 46700 0.67 0.999748
Target:  5'- --cAGGAGGCCUAucccACGCUcGCCgccaGCCa -3'
miRNA:   3'- ccaUUUUCUGGGU----UGUGAaCGGa---UGG- -5'
13423 5' -46.4 NC_003409.1 + 46764 0.67 0.999593
Target:  5'- uGGUGgcGGGGGcCCCAGCAa--GCCUGgCa -3'
miRNA:   3'- -CCAU--UUUCU-GGGUUGUgaaCGGAUgG- -5'
13423 5' -46.4 NC_003409.1 + 49301 0.72 0.982585
Target:  5'- gGGUgcGAAGGACCUGAUACgccacggugGCCcUGCCu -3'
miRNA:   3'- -CCA--UUUUCUGGGUUGUGaa-------CGG-AUGG- -5'
13423 5' -46.4 NC_003409.1 + 51583 0.7 0.996954
Target:  5'- ------uGGCUUGGCGCUUaGCCUGCCu -3'
miRNA:   3'- ccauuuuCUGGGUUGUGAA-CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 51834 0.66 0.999884
Target:  5'- -----cGGACCCGGCACUcacCCguggACCg -3'
miRNA:   3'- ccauuuUCUGGGUUGUGAac-GGa---UGG- -5'
13423 5' -46.4 NC_003409.1 + 57370 0.68 0.999207
Target:  5'- aGGcc-AAGAUCCAACccaGCaUGCCUGCg -3'
miRNA:   3'- -CCauuUUCUGGGUUG---UGaACGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 59121 0.68 0.999361
Target:  5'- ---cGAGGACCCAAUACcaGUCcgACCa -3'
miRNA:   3'- ccauUUUCUGGGUUGUGaaCGGa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.