miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13423 5' -46.4 NC_003409.1 + 133782 0.67 0.999849
Target:  5'- cGGgcuGGGGACCCucgGGCACUU-CCaACCc -3'
miRNA:   3'- -CCau-UUUCUGGG---UUGUGAAcGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 133292 0.68 0.999489
Target:  5'- cGGUGcgcaucuuGGAGACCCugaaGCUgguccagcgGCUUGCCa -3'
miRNA:   3'- -CCAU--------UUUCUGGGuug-UGAa--------CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 133199 0.67 0.999679
Target:  5'- uGGUGAGGcACCUgcaGGCGCUggcGCCgcggACCg -3'
miRNA:   3'- -CCAUUUUcUGGG---UUGUGAa--CGGa---UGG- -5'
13423 5' -46.4 NC_003409.1 + 130918 0.66 0.99995
Target:  5'- uGGUGAGGauuccgaccGGCCCAcuACACccaggGCC-ACCa -3'
miRNA:   3'- -CCAUUUU---------CUGGGU--UGUGaa---CGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 128328 0.67 0.999748
Target:  5'- uGGUGGccggcAGGugUCAuGCACa-GCCUGCCu -3'
miRNA:   3'- -CCAUU-----UUCugGGU-UGUGaaCGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 127145 0.73 0.966176
Target:  5'- cGGgaauguGGACCCcACAcCUUGCCUauACCu -3'
miRNA:   3'- -CCauuu--UCUGGGuUGU-GAACGGA--UGG- -5'
13423 5' -46.4 NC_003409.1 + 124516 0.67 0.999584
Target:  5'- cGGUGGAAGAgCCCAuaaucuuGCACggGUCgucauCCg -3'
miRNA:   3'- -CCAUUUUCU-GGGU-------UGUGaaCGGau---GG- -5'
13423 5' -46.4 NC_003409.1 + 123902 0.67 0.999679
Target:  5'- gGGUG--GGGCaagcagGACACgggGCCUGCCu -3'
miRNA:   3'- -CCAUuuUCUGgg----UUGUGaa-CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 122066 0.68 0.999207
Target:  5'- aGGU-GAAGGCCCAuuaggguuuGCACUUggcgcuguagGUCUACUc -3'
miRNA:   3'- -CCAuUUUCUGGGU---------UGUGAA----------CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 118756 0.69 0.997867
Target:  5'- aGGUGAGguGGACCUAGCAUcccGCUcccauuUACCg -3'
miRNA:   3'- -CCAUUU--UCUGGGUUGUGaa-CGG------AUGG- -5'
13423 5' -46.4 NC_003409.1 + 113738 0.71 0.992127
Target:  5'- uGGUuuggauGAGGCCCAGCugacgGCCcACCg -3'
miRNA:   3'- -CCAuu----UUCUGGGUUGugaa-CGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 110384 0.66 0.999896
Target:  5'- gGGUAGAuggccugaaauaauGACCaCAGCAacaaccccCUgccGCCUACCg -3'
miRNA:   3'- -CCAUUUu-------------CUGG-GUUGU--------GAa--CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 110111 0.67 0.999849
Target:  5'- -----cGGACaCCGGCAuCUUGCCagcGCCg -3'
miRNA:   3'- ccauuuUCUG-GGUUGU-GAACGGa--UGG- -5'
13423 5' -46.4 NC_003409.1 + 109861 0.67 0.999679
Target:  5'- cGGUGGc--GCCCGGCGCaacacUGCC-ACCg -3'
miRNA:   3'- -CCAUUuucUGGGUUGUGa----ACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 109703 0.7 0.996389
Target:  5'- uGGUGu-GGGCCgu-CACUUGCCUAgauCCu -3'
miRNA:   3'- -CCAUuuUCUGGguuGUGAACGGAU---GG- -5'
13423 5' -46.4 NC_003409.1 + 109373 0.71 0.989577
Target:  5'- aGGUGGcgcuGGCCCcGCGCgaccUGaCCUACCu -3'
miRNA:   3'- -CCAUUuu--CUGGGuUGUGa---AC-GGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 108987 0.66 0.999934
Target:  5'- ------cGACCCcACGCgcccgGCCUGCg -3'
miRNA:   3'- ccauuuuCUGGGuUGUGaa---CGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 108722 0.67 0.999748
Target:  5'- cGGUuuAGGGacucgcCCCAGCuaGCUgGCCUGCa -3'
miRNA:   3'- -CCAuuUUCU------GGGUUG--UGAaCGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 101884 0.66 0.999932
Target:  5'- uGGUGGcGGAaaauacuCCCAuu-CUUGCCUucACCg -3'
miRNA:   3'- -CCAUUuUCU-------GGGUuguGAACGGA--UGG- -5'
13423 5' -46.4 NC_003409.1 + 101034 1.16 0.009448
Target:  5'- aGGUAAAAGACCCAACACUUGCCUACCc -3'
miRNA:   3'- -CCAUUUUCUGGGUUGUGAACGGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.