miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13423 5' -46.4 NC_003409.1 + 101034 1.16 0.009448
Target:  5'- aGGUAAAAGACCCAACACUUGCCUACCc -3'
miRNA:   3'- -CCAUUUUCUGGGUUGUGAACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 123902 0.67 0.999679
Target:  5'- gGGUG--GGGCaagcagGACACgggGCCUGCCu -3'
miRNA:   3'- -CCAUuuUCUGgg----UUGUGaa-CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 60153 0.67 0.999748
Target:  5'- cGGcGGGAGAgCCAAucugaugcCAC-UGCCUAUCg -3'
miRNA:   3'- -CCaUUUUCUgGGUU--------GUGaACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 34727 0.66 0.99995
Target:  5'- gGGUGugGGGCCCAGaauCUUcccGCCUcuguCCa -3'
miRNA:   3'- -CCAUuuUCUGGGUUgu-GAA---CGGAu---GG- -5'
13423 5' -46.4 NC_003409.1 + 64771 0.71 0.989577
Target:  5'- uGUAGAGucuGACCUcugacauaagAAUACUUGCCUugCa -3'
miRNA:   3'- cCAUUUU---CUGGG----------UUGUGAACGGAugG- -5'
13423 5' -46.4 NC_003409.1 + 109373 0.71 0.989577
Target:  5'- aGGUGGcgcuGGCCCcGCGCgaccUGaCCUACCu -3'
miRNA:   3'- -CCAUUuu--CUGGGuUGUGa---AC-GGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 51583 0.7 0.996954
Target:  5'- ------uGGCUUGGCGCUUaGCCUGCCu -3'
miRNA:   3'- ccauuuuCUGGGUUGUGAA-CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 36273 0.69 0.997444
Target:  5'- uGGUAAggcggGAGACCC---GCUgacGUCUGCCa -3'
miRNA:   3'- -CCAUU-----UUCUGGGuugUGAa--CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 97722 0.68 0.999207
Target:  5'- -cUGAcAGACCaGGCACUcgggGUCUGCCg -3'
miRNA:   3'- ccAUUuUCUGGgUUGUGAa---CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 109861 0.67 0.999679
Target:  5'- cGGUGGc--GCCCGGCGCaacacUGCC-ACCg -3'
miRNA:   3'- -CCAUUuucUGGGUUGUGa----ACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 57370 0.68 0.999207
Target:  5'- aGGcc-AAGAUCCAACccaGCaUGCCUGCg -3'
miRNA:   3'- -CCauuUUCUGGGUUG---UGaACGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 42711 0.68 0.999022
Target:  5'- aGUAGGGGGCCCucgAGCGC-UGCCauggaggcgACCu -3'
miRNA:   3'- cCAUUUUCUGGG---UUGUGaACGGa--------UGG- -5'
13423 5' -46.4 NC_003409.1 + 77444 0.76 0.899531
Target:  5'- cGGgcGAAGGCCUGGCGCUgaGCCcaGCCg -3'
miRNA:   3'- -CCauUUUCUGGGUUGUGAa-CGGa-UGG- -5'
13423 5' -46.4 NC_003409.1 + 21696 0.68 0.999347
Target:  5'- uGGUAAccGAgaCAGCACUUGUCcggucuaUGCCa -3'
miRNA:   3'- -CCAUUuuCUggGUUGUGAACGG-------AUGG- -5'
13423 5' -46.4 NC_003409.1 + 79229 0.74 0.9548
Target:  5'- gGGggGGAGGCCCAAaucuaucuCUUGCC-GCCa -3'
miRNA:   3'- -CCauUUUCUGGGUUgu------GAACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 118756 0.69 0.997867
Target:  5'- aGGUGAGguGGACCUAGCAUcccGCUcccauuUACCg -3'
miRNA:   3'- -CCAUUU--UCUGGGUUGUGaa-CGG------AUGG- -5'
13423 5' -46.4 NC_003409.1 + 44871 0.67 0.999671
Target:  5'- ------cGACCC-GCAUcugcugccucccuUUGCCUACCa -3'
miRNA:   3'- ccauuuuCUGGGuUGUG-------------AACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 46700 0.67 0.999748
Target:  5'- --cAGGAGGCCUAucccACGCUcGCCgccaGCCa -3'
miRNA:   3'- ccaUUUUCUGGGU----UGUGAaCGGa---UGG- -5'
13423 5' -46.4 NC_003409.1 + 92038 0.74 0.962636
Target:  5'- cGGUGggacAGGGGCCU-ACAUUUGCCUAUUc -3'
miRNA:   3'- -CCAU----UUUCUGGGuUGUGAACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 109703 0.7 0.996389
Target:  5'- uGGUGu-GGGCCgu-CACUUGCCUAgauCCu -3'
miRNA:   3'- -CCAUuuUCUGGguuGUGAACGGAU---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.