miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13423 5' -46.4 NC_003409.1 + 113738 0.71 0.992127
Target:  5'- uGGUuuggauGAGGCCCAGCugacgGCCcACCg -3'
miRNA:   3'- -CCAuu----UUCUGGGUUGugaa-CGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 40581 0.68 0.999361
Target:  5'- aGUAGAGGGCgCGGCGC--GCCUGUCg -3'
miRNA:   3'- cCAUUUUCUGgGUUGUGaaCGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 59121 0.68 0.999361
Target:  5'- ---cGAGGACCCAAUACcaGUCcgACCa -3'
miRNA:   3'- ccauUUUCUGGGUUGUGaaCGGa-UGG- -5'
13423 5' -46.4 NC_003409.1 + 65698 0.68 0.999207
Target:  5'- gGGUGGGAGACCCcACGCagacuaUGCaagGCa -3'
miRNA:   3'- -CCAUUUUCUGGGuUGUGa-----ACGga-UGg -5'
13423 5' -46.4 NC_003409.1 + 85330 0.68 0.999207
Target:  5'- cGGUGGcuc-CCCGGCAUagcugUGCUUACCa -3'
miRNA:   3'- -CCAUUuucuGGGUUGUGa----ACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 72456 0.68 0.999022
Target:  5'- --gAGAAGACCCuauAC-CUUGCaaagACCa -3'
miRNA:   3'- ccaUUUUCUGGGu--UGuGAACGga--UGG- -5'
13423 5' -46.4 NC_003409.1 + 64921 0.68 0.999022
Target:  5'- aGGUc--AGACUCuACACUgcaGCCUGCg -3'
miRNA:   3'- -CCAuuuUCUGGGuUGUGAa--CGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 33781 0.68 0.998801
Target:  5'- uGGUAucccugcuGGGACCCAAauuucaGCccggUGCCcUACCg -3'
miRNA:   3'- -CCAUu-------UUCUGGGUUg-----UGa---ACGG-AUGG- -5'
13423 5' -46.4 NC_003409.1 + 93308 0.7 0.994998
Target:  5'- aGGUGcAGGGCCCAuuACACgUGCacACCc -3'
miRNA:   3'- -CCAUuUUCUGGGU--UGUGaACGgaUGG- -5'
13423 5' -46.4 NC_003409.1 + 133292 0.68 0.999489
Target:  5'- cGGUGcgcaucuuGGAGACCCugaaGCUgguccagcgGCUUGCCa -3'
miRNA:   3'- -CCAU--------UUUCUGGGuug-UGAa--------CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 124516 0.67 0.999584
Target:  5'- cGGUGGAAGAgCCCAuaaucuuGCACggGUCgucauCCg -3'
miRNA:   3'- -CCAUUUUCU-GGGU-------UGUGaaCGGau---GG- -5'
13423 5' -46.4 NC_003409.1 + 46764 0.67 0.999593
Target:  5'- uGGUGgcGGGGGcCCCAGCAa--GCCUGgCa -3'
miRNA:   3'- -CCAU--UUUCU-GGGUUGUgaaCGGAUgG- -5'
13423 5' -46.4 NC_003409.1 + 88116 0.66 0.99993
Target:  5'- -----cAGACCCu-CACUcaucuggugcagGCCUACCg -3'
miRNA:   3'- ccauuuUCUGGGuuGUGAa-----------CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 15432 0.66 0.999912
Target:  5'- gGGUGAAGccuGACCCAugACaaGCUgACg -3'
miRNA:   3'- -CCAUUUU---CUGGGUugUGaaCGGaUGg -5'
13423 5' -46.4 NC_003409.1 + 27282 0.66 0.999884
Target:  5'- aGGcAGcuGAUgCAGCGgcUGCCUGCCa -3'
miRNA:   3'- -CCaUUuuCUGgGUUGUgaACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 110111 0.67 0.999849
Target:  5'- -----cGGACaCCGGCAuCUUGCCagcGCCg -3'
miRNA:   3'- ccauuuUCUG-GGUUGU-GAACGGa--UGG- -5'
13423 5' -46.4 NC_003409.1 + 77610 0.67 0.999679
Target:  5'- cGGcu--GGGCUCAGCGCcagGCCUucGCCc -3'
miRNA:   3'- -CCauuuUCUGGGUUGUGaa-CGGA--UGG- -5'
13423 5' -46.4 NC_003409.1 + 133199 0.67 0.999679
Target:  5'- uGGUGAGGcACCUgcaGGCGCUggcGCCgcggACCg -3'
miRNA:   3'- -CCAUUUUcUGGG---UUGUGAa--CGGa---UGG- -5'
13423 5' -46.4 NC_003409.1 + 24391 0.67 0.999593
Target:  5'- gGGUAAauccaaGAGAUCCGuccCACgUGCC-GCCg -3'
miRNA:   3'- -CCAUU------UUCUGGGUu--GUGaACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 86997 0.67 0.999593
Target:  5'- uGGcGAAAGGCCCAGaguucCACUUGUUagUACa -3'
miRNA:   3'- -CCaUUUUCUGGGUU-----GUGAACGG--AUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.