Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13426 | 5' | -53.3 | NC_003409.1 | + | 7383 | 0.66 | 0.960816 |
Target: 5'- cUGC-AGGccgugUCUGGGAGcAUgGCCUGCa -3' miRNA: 3'- cGCGcUCCa----AGACCUUU-UGgCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 10709 | 0.68 | 0.906556 |
Target: 5'- uGCGCGAGGaUCUGGAcAACa-CCa-- -3' miRNA: 3'- -CGCGCUCCaAGACCUuUUGgcGGacg -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 12267 | 0.66 | 0.960816 |
Target: 5'- gGUGCGGGGggCcGGAuuGCUGCaCUcGUa -3' miRNA: 3'- -CGCGCUCCaaGaCCUuuUGGCG-GA-CG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 14235 | 0.68 | 0.91151 |
Target: 5'- uGCGgGAGGUUUUGcGucuuguaguCCGCCaGCg -3' miRNA: 3'- -CGCgCUCCAAGAC-Cuuuu-----GGCGGaCG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 19552 | 0.7 | 0.848733 |
Target: 5'- cGCGCGuGG-UCUGGc-GACC-CUUGCg -3' miRNA: 3'- -CGCGCuCCaAGACCuuUUGGcGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 21515 | 0.68 | 0.924315 |
Target: 5'- gGCGCGGGGUgucGGAAGGCacaacucuaCUGCa -3' miRNA: 3'- -CGCGCUCCAagaCCUUUUGgcg------GACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 24732 | 0.71 | 0.805771 |
Target: 5'- cGCGcCGGGGcucCUGGGGuGCUGCCgggGCu -3' miRNA: 3'- -CGC-GCUCCaa-GACCUUuUGGCGGa--CG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 25593 | 0.67 | 0.947645 |
Target: 5'- uGCGCGGGGggggggguguauacgCUGcGAAAACCuGCacggUGCa -3' miRNA: 3'- -CGCGCUCCaa-------------GAC-CUUUUGG-CGg---ACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 33813 | 0.68 | 0.905294 |
Target: 5'- cGCGCGAGGgcaccc-AAACCGCC-GCu -3' miRNA: 3'- -CGCGCUCCaagaccuUUUGGCGGaCG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 35181 | 0.66 | 0.963968 |
Target: 5'- -gGgGAgGGUUCUGGGgccggcuacuuagAAACCGCCa-- -3' miRNA: 3'- cgCgCU-CCAAGACCU-------------UUUGGCGGacg -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 41548 | 0.66 | 0.970623 |
Target: 5'- cGCGCGuccguGGccgcguaucgUUGG-AAGCaCGCCUGCa -3' miRNA: 3'- -CGCGCu----CCaa--------GACCuUUUG-GCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 42910 | 0.68 | 0.906556 |
Target: 5'- aUGUGuGGaguuuguuaaguUUCUGGAGAccgcccucgccGCCGCUUGCg -3' miRNA: 3'- cGCGCuCC------------AAGACCUUU-----------UGGCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 44954 | 0.66 | 0.967574 |
Target: 5'- cCGCGAG---CUuGAGAAgCGCCUGCu -3' miRNA: 3'- cGCGCUCcaaGAcCUUUUgGCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 46552 | 0.66 | 0.963283 |
Target: 5'- aCGCGGGG-UCUGGuauugaauggucguAGAGCaaaCGCuCUGCg -3' miRNA: 3'- cGCGCUCCaAGACC--------------UUUUG---GCG-GACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 51921 | 0.66 | 0.967257 |
Target: 5'- gGCGCucGAGGcUCcgggaaccgugcgUGGAGAAagccuagacCCGCCUGUu -3' miRNA: 3'- -CGCG--CUCCaAG-------------ACCUUUU---------GGCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 52232 | 0.69 | 0.856742 |
Target: 5'- aGUGCGAcuUUgUGGAcacgcuagAGGCCGCCUGUc -3' miRNA: 3'- -CGCGCUccAAgACCU--------UUUGGCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 57495 | 0.68 | 0.916893 |
Target: 5'- gGUGUcAGGUUaCUGGAcGuggccagcguguacGCCGCCUGUu -3' miRNA: 3'- -CGCGcUCCAA-GACCUuU--------------UGGCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 72943 | 0.69 | 0.8866 |
Target: 5'- uGCcUGGGGgcCUGGAGgcGACuCGUCUGCa -3' miRNA: 3'- -CGcGCUCCaaGACCUU--UUG-GCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 73599 | 0.77 | 0.445442 |
Target: 5'- aGCGCGGGGUaCcggaGGGGAGuuGCCUGUa -3' miRNA: 3'- -CGCGCUCCAaGa---CCUUUUggCGGACG- -5' |
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13426 | 5' | -53.3 | NC_003409.1 | + | 78521 | 0.7 | 0.848733 |
Target: 5'- gGgGCuGGGGUcgUCUGGGuuuuaGAGCCGCC-GCc -3' miRNA: 3'- -CgCG-CUCCA--AGACCU-----UUUGGCGGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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