miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13426 5' -53.3 NC_003409.1 + 73599 0.77 0.445442
Target:  5'- aGCGCGGGGUaCcggaGGGGAGuuGCCUGUa -3'
miRNA:   3'- -CGCGCUCCAaGa---CCUUUUggCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 35181 0.66 0.963968
Target:  5'- -gGgGAgGGUUCUGGGgccggcuacuuagAAACCGCCa-- -3'
miRNA:   3'- cgCgCU-CCAAGACCU-------------UUUGGCGGacg -5'
13426 5' -53.3 NC_003409.1 + 113764 0.66 0.970327
Target:  5'- cGCGCGucGGgccgUUggugGGAAAACCGgcaccacCCUGUg -3'
miRNA:   3'- -CGCGCu-CCa---AGa---CCUUUUGGC-------GGACG- -5'
13426 5' -53.3 NC_003409.1 + 41548 0.66 0.970623
Target:  5'- cGCGCGuccguGGccgcguaucgUUGG-AAGCaCGCCUGCa -3'
miRNA:   3'- -CGCGCu----CCaa--------GACCuUUUG-GCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 106669 0.71 0.805771
Target:  5'- aGCGaGAGGUUCUcccggcuGAAGACCGCCa-- -3'
miRNA:   3'- -CGCgCUCCAAGAc------CUUUUGGCGGacg -5'
13426 5' -53.3 NC_003409.1 + 78521 0.7 0.848733
Target:  5'- gGgGCuGGGGUcgUCUGGGuuuuaGAGCCGCC-GCc -3'
miRNA:   3'- -CgCG-CUCCA--AGACCU-----UUUGGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 118324 0.69 0.872119
Target:  5'- cGCGCcGGGUUcCUGG-GGugCGCC-GCg -3'
miRNA:   3'- -CGCGcUCCAA-GACCuUUugGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 118370 0.69 0.872119
Target:  5'- cGCGCcGGGUUcCUGG-GGugCGCC-GCg -3'
miRNA:   3'- -CGCGcUCCAA-GACCuUUugGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 96683 0.68 0.900145
Target:  5'- uGCGCGcacacuGGGUgaUCUGGAgacgauAGACUGCCUu- -3'
miRNA:   3'- -CGCGC------UCCA--AGACCU------UUUGGCGGAcg -5'
13426 5' -53.3 NC_003409.1 + 25593 0.67 0.947645
Target:  5'- uGCGCGGGGggggggguguauacgCUGcGAAAACCuGCacggUGCa -3'
miRNA:   3'- -CGCGCUCCaa-------------GAC-CUUUUGG-CGg---ACG- -5'
13426 5' -53.3 NC_003409.1 + 10709 0.68 0.906556
Target:  5'- uGCGCGAGGaUCUGGAcAACa-CCa-- -3'
miRNA:   3'- -CGCGCUCCaAGACCUuUUGgcGGacg -5'
13426 5' -53.3 NC_003409.1 + 72943 0.69 0.8866
Target:  5'- uGCcUGGGGgcCUGGAGgcGACuCGUCUGCa -3'
miRNA:   3'- -CGcGCUCCaaGACCUU--UUG-GCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 118478 0.76 0.532924
Target:  5'- gGUGCGGGGUgc-GGggGACCGCgccgggguaCUGCa -3'
miRNA:   3'- -CGCGCUCCAagaCCuuUUGGCG---------GACG- -5'
13426 5' -53.3 NC_003409.1 + 42910 0.68 0.906556
Target:  5'- aUGUGuGGaguuuguuaaguUUCUGGAGAccgcccucgccGCCGCUUGCg -3'
miRNA:   3'- cGCGCuCC------------AAGACCUUU-----------UGGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 111514 0.73 0.688238
Target:  5'- cGCGCGGGGUUucCUGGAcacGCCcUCUGUa -3'
miRNA:   3'- -CGCGCUCCAA--GACCUuu-UGGcGGACG- -5'
13426 5' -53.3 NC_003409.1 + 118416 0.69 0.872119
Target:  5'- cGCGCcGGGUUcCUGG-GGugCGCC-GCg -3'
miRNA:   3'- -CGCGcUCCAA-GACCuUUugGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 57495 0.68 0.916893
Target:  5'- gGUGUcAGGUUaCUGGAcGuggccagcguguacGCCGCCUGUu -3'
miRNA:   3'- -CGCGcUCCAA-GACCUuU--------------UGGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 51921 0.66 0.967257
Target:  5'- gGCGCucGAGGcUCcgggaaccgugcgUGGAGAAagccuagacCCGCCUGUu -3'
miRNA:   3'- -CGCG--CUCCaAG-------------ACCUUUU---------GGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 86608 0.72 0.748926
Target:  5'- cGUGCGGGGacCUGGAccucgggcGCCGCCUa- -3'
miRNA:   3'- -CGCGCUCCaaGACCUuu------UGGCGGAcg -5'
13426 5' -53.3 NC_003409.1 + 52232 0.69 0.856742
Target:  5'- aGUGCGAcuUUgUGGAcacgcuagAGGCCGCCUGUc -3'
miRNA:   3'- -CGCGCUccAAgACCU--------UUUGGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.