miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 14379 0.68 0.987315
Target:  5'- aCGCCCuAGUgACucAGACGcggAAACaGCGCCu -3'
miRNA:   3'- -GUGGG-UUAgUGu-UCUGC---UUUG-CGCGG- -5'
13428 3' -50 NC_003409.1 + 134207 0.68 0.987315
Target:  5'- -cCCCAuGUCAUcAGGCGGucUGUGCCa -3'
miRNA:   3'- guGGGU-UAGUGuUCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 111200 0.68 0.985627
Target:  5'- gCACCC-GUCAUucGAguAAugGCGCCc -3'
miRNA:   3'- -GUGGGuUAGUGuuCUgcUUugCGCGG- -5'
13428 3' -50 NC_003409.1 + 32047 0.68 0.983772
Target:  5'- uCAUCaguAUC-UAAGuCGGAGCGCGCCc -3'
miRNA:   3'- -GUGGgu-UAGuGUUCuGCUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 20416 0.68 0.983772
Target:  5'- aCAUaacaAGUgACAGGGCGGAA-GCGCCa -3'
miRNA:   3'- -GUGgg--UUAgUGUUCUGCUUUgCGCGG- -5'
13428 3' -50 NC_003409.1 + 109474 0.68 0.981742
Target:  5'- -uCCCGugggCcCAAGACG--GCGCGCCc -3'
miRNA:   3'- guGGGUua--GuGUUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 110975 0.68 0.981742
Target:  5'- -cCCCGGaCugAGGGCGAAGgccgGCGCCc -3'
miRNA:   3'- guGGGUUaGugUUCUGCUUUg---CGCGG- -5'
13428 3' -50 NC_003409.1 + 37479 0.68 0.979527
Target:  5'- uGCCCGggCACcuuGGCGGAuuugggaucaacGCGCGUCu -3'
miRNA:   3'- gUGGGUuaGUGuu-CUGCUU------------UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 121278 0.68 0.979527
Target:  5'- aGCCCGcUCAUAAGACcauAACcugGUGCCa -3'
miRNA:   3'- gUGGGUuAGUGUUCUGcu-UUG---CGCGG- -5'
13428 3' -50 NC_003409.1 + 49283 0.69 0.974507
Target:  5'- aCGCCaCGGUgGCccugccuAGugGGguGGCGCGCCa -3'
miRNA:   3'- -GUGG-GUUAgUGu------UCugCU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 87175 0.69 0.974507
Target:  5'- uGCgCCGG-CGgAGGGCGuggccGACGCGCCa -3'
miRNA:   3'- gUG-GGUUaGUgUUCUGCu----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 44364 0.69 0.974507
Target:  5'- gCACCCcuGUCcuggaGCGAGAgGAucguacCGCGCCa -3'
miRNA:   3'- -GUGGGu-UAG-----UGUUCUgCUuu----GCGCGG- -5'
13428 3' -50 NC_003409.1 + 60071 0.69 0.973683
Target:  5'- gACCCAGgaggaCAUGAGAaaacggucgcucuuUGAAGCGCGCa -3'
miRNA:   3'- gUGGGUUa----GUGUUCU--------------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 44009 0.69 0.97284
Target:  5'- cCAUCCAGUCGacCGAGACGugggugguuaauaaaAAcaACGUGCCu -3'
miRNA:   3'- -GUGGGUUAGU--GUUCUGC---------------UU--UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24716 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24776 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 107946 0.69 0.968647
Target:  5'- gGCCUgcugcaAAUCGCcGGACuGGAGCGCGUg -3'
miRNA:   3'- gUGGG------UUAGUGuUCUG-CUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 90723 0.69 0.968647
Target:  5'- -uCCUGGcUCugGAGACGAaggacccucGACGCGUCa -3'
miRNA:   3'- guGGGUU-AGugUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 37944 0.69 0.968647
Target:  5'- gAUCguAUCAauCGAGGCcAGGCGCGCCu -3'
miRNA:   3'- gUGGguUAGU--GUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24596 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.