miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 20416 0.68 0.983772
Target:  5'- aCAUaacaAGUgACAGGGCGGAA-GCGCCa -3'
miRNA:   3'- -GUGgg--UUAgUGUUCUGCUUUgCGCGG- -5'
13428 3' -50 NC_003409.1 + 44364 0.69 0.974507
Target:  5'- gCACCCcuGUCcuggaGCGAGAgGAucguacCGCGCCa -3'
miRNA:   3'- -GUGGGu-UAG-----UGUUCUgCUuu----GCGCGG- -5'
13428 3' -50 NC_003409.1 + 37944 0.69 0.968647
Target:  5'- gAUCguAUCAauCGAGGCcAGGCGCGCCu -3'
miRNA:   3'- gUGGguUAGU--GUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 81001 0.72 0.893582
Target:  5'- aGCCUGucCACcGGACGAGugGCGCg -3'
miRNA:   3'- gUGGGUuaGUGuUCUGCUUugCGCGg -5'
13428 3' -50 NC_003409.1 + 118299 0.66 0.994473
Target:  5'- -uCCCGGggAgGAGGCuGGggUGCGCCg -3'
miRNA:   3'- guGGGUUagUgUUCUG-CUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 108098 0.67 0.988845
Target:  5'- -uUCgAGUCGCucGAGAgCGAcauGCGCGCCg -3'
miRNA:   3'- guGGgUUAGUG--UUCU-GCUu--UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 60071 0.69 0.973683
Target:  5'- gACCCAGgaggaCAUGAGAaaacggucgcucuuUGAAGCGCGCa -3'
miRNA:   3'- gUGGGUUa----GUGUUCU--------------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 74251 0.73 0.879251
Target:  5'- uCGCCCuGUU---AGACGAAGCGgGCCc -3'
miRNA:   3'- -GUGGGuUAGuguUCUGCUUUGCgCGG- -5'
13428 3' -50 NC_003409.1 + 2298 0.67 0.988845
Target:  5'- aCACCCAcuUCcCAAGAUGAuGCuaCGCCu -3'
miRNA:   3'- -GUGGGUu-AGuGUUCUGCUuUGc-GCGG- -5'
13428 3' -50 NC_003409.1 + 40199 0.73 0.855975
Target:  5'- uCGCCUAcgCACAAGugGcuucuuAACGCGUa -3'
miRNA:   3'- -GUGGGUuaGUGUUCugCu-----UUGCGCGg -5'
13428 3' -50 NC_003409.1 + 87175 0.69 0.974507
Target:  5'- uGCgCCGG-CGgAGGGCGuggccGACGCGCCa -3'
miRNA:   3'- gUG-GGUUaGUgUUCUGCu----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 111200 0.68 0.985627
Target:  5'- gCACCC-GUCAUucGAguAAugGCGCCc -3'
miRNA:   3'- -GUGGGuUAGUGuuCUgcUUugCGCGG- -5'
13428 3' -50 NC_003409.1 + 24776 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24596 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 106105 0.7 0.958153
Target:  5'- -cCCCAAUCGCAacAGACGuucgaaGUGCUg -3'
miRNA:   3'- guGGGUUAGUGU--UCUGCuuug--CGCGG- -5'
13428 3' -50 NC_003409.1 + 109836 0.72 0.906917
Target:  5'- cCGCCCAAgacgccgcggCGgGAGGCG-GugGCGCCc -3'
miRNA:   3'- -GUGGGUUa---------GUgUUCUGCuUugCGCGG- -5'
13428 3' -50 NC_003409.1 + 87720 0.66 0.996555
Target:  5'- gCACUUucucCGgGAGACcAGACGCGCCc -3'
miRNA:   3'- -GUGGGuua-GUgUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 7520 0.66 0.995883
Target:  5'- uCACCUGGccucgcuguuuacUCACGAGGCuGAcaugcauaaaaGGCGCGUCg -3'
miRNA:   3'- -GUGGGUU-------------AGUGUUCUG-CU-----------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 118730 0.67 0.99259
Target:  5'- cCACCCAuuUCcCGGGGC----CGCGCCa -3'
miRNA:   3'- -GUGGGUu-AGuGUUCUGcuuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 40404 0.67 0.988845
Target:  5'- aCACgCGcUCGCcuGuCGAcaGGCGCGCCg -3'
miRNA:   3'- -GUGgGUuAGUGuuCuGCU--UUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.