miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 104677 1.12 0.006928
Target:  5'- cCACCCAAUCACAAGACGAAACGCGCCc -3'
miRNA:   3'- -GUGGGUUAGUGUUCUGCUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 60071 0.69 0.973683
Target:  5'- gACCCAGgaggaCAUGAGAaaacggucgcucuuUGAAGCGCGCa -3'
miRNA:   3'- gUGGGUUa----GUGUUCU--------------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 44364 0.69 0.974507
Target:  5'- gCACCCcuGUCcuggaGCGAGAgGAucguacCGCGCCa -3'
miRNA:   3'- -GUGGGu-UAG-----UGUUCUgCUuu----GCGCGG- -5'
13428 3' -50 NC_003409.1 + 51033 0.66 0.997085
Target:  5'- gACgCAuAUCACGGGAUGcuAGCGUGUCu -3'
miRNA:   3'- gUGgGU-UAGUGUUCUGCu-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 109836 0.72 0.906917
Target:  5'- cCGCCCAAgacgccgcggCGgGAGGCG-GugGCGCCc -3'
miRNA:   3'- -GUGGGUUa---------GUgUUCUGCuUugCGCGG- -5'
13428 3' -50 NC_003409.1 + 81337 0.71 0.935755
Target:  5'- -cCCCAAcgGCAAGGCGcaguacgugcGGCGCGCCu -3'
miRNA:   3'- guGGGUUagUGUUCUGCu---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 106105 0.7 0.958153
Target:  5'- -cCCCAAUCGCAacAGACGuucgaaGUGCUg -3'
miRNA:   3'- guGGGUUAGUGU--UCUGCuuug--CGCGG- -5'
13428 3' -50 NC_003409.1 + 127377 0.7 0.958153
Target:  5'- cCGCCgAuggcCACcAGAUGgcACGCGCCg -3'
miRNA:   3'- -GUGGgUua--GUGuUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24596 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 44009 0.69 0.97284
Target:  5'- cCAUCCAGUCGacCGAGACGugggugguuaauaaaAAcaACGUGCCu -3'
miRNA:   3'- -GUGGGUUAGU--GUUCUGC---------------UU--UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24716 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 37944 0.69 0.968647
Target:  5'- gAUCguAUCAauCGAGGCcAGGCGCGCCu -3'
miRNA:   3'- gUGGguUAGU--GUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 40199 0.73 0.855975
Target:  5'- uCGCCUAcgCACAAGugGcuucuuAACGCGUa -3'
miRNA:   3'- -GUGGGUuaGUGUUCugCu-----UUGCGCGg -5'
13428 3' -50 NC_003409.1 + 24776 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 74251 0.73 0.879251
Target:  5'- uCGCCCuGUU---AGACGAAGCGgGCCc -3'
miRNA:   3'- -GUGGGuUAGuguUCUGCUUUGCgCGG- -5'
13428 3' -50 NC_003409.1 + 114435 0.69 0.965382
Target:  5'- aCACCCGcaGUCAauCAGGGCcgugccCGCGCCu -3'
miRNA:   3'- -GUGGGU--UAGU--GUUCUGcuuu--GCGCGG- -5'
13428 3' -50 NC_003409.1 + 24836 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 87175 0.69 0.974507
Target:  5'- uGCgCCGG-CGgAGGGCGuggccGACGCGCCa -3'
miRNA:   3'- gUG-GGUUaGUgUUCUGCu----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 81001 0.72 0.893582
Target:  5'- aGCCUGucCACcGGACGAGugGCGCg -3'
miRNA:   3'- gUGGGUuaGUGuUCUGCUUugCGCGg -5'
13428 3' -50 NC_003409.1 + 127654 0.71 0.940743
Target:  5'- cCGCCCGAa-ACAAGugGgcGgGCGCUa -3'
miRNA:   3'- -GUGGGUUagUGUUCugCuuUgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.