Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13428 | 3' | -50 | NC_003409.1 | + | 104677 | 1.12 | 0.006928 |
Target: 5'- cCACCCAAUCACAAGACGAAACGCGCCc -3' miRNA: 3'- -GUGGGUUAGUGUUCUGCUUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 127290 | 0.74 | 0.821895 |
Target: 5'- gCGCCUGAgguCGGGACGGAgcaccgGCGCGCCc -3' miRNA: 3'- -GUGGGUUaguGUUCUGCUU------UGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 90808 | 0.74 | 0.839345 |
Target: 5'- aAUCUGAggacUCugGAGACGAgggaccaucGACGCGCCa -3' miRNA: 3'- gUGGGUU----AGugUUCUGCU---------UUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 114021 | 0.73 | 0.847766 |
Target: 5'- aCGCCCAaaaGUCACAAGAgacUGAAGuCGCuGCUg -3' miRNA: 3'- -GUGGGU---UAGUGUUCU---GCUUU-GCG-CGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 76441 | 0.73 | 0.855975 |
Target: 5'- uUACCCAAUUGCGAGGgauuacaguUGAAACGUGUa -3' miRNA: 3'- -GUGGGUUAGUGUUCU---------GCUUUGCGCGg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 40199 | 0.73 | 0.855975 |
Target: 5'- uCGCCUAcgCACAAGugGcuucuuAACGCGUa -3' miRNA: 3'- -GUGGGUuaGUGUUCugCu-----UUGCGCGg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 74251 | 0.73 | 0.879251 |
Target: 5'- uCGCCCuGUU---AGACGAAGCGgGCCc -3' miRNA: 3'- -GUGGGuUAGuguUCUGCUUUGCgCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 130730 | 0.72 | 0.886539 |
Target: 5'- aCAUCCAGUgAC-GGGCGAcACGCuGCCc -3' miRNA: 3'- -GUGGGUUAgUGuUCUGCUuUGCG-CGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 81001 | 0.72 | 0.893582 |
Target: 5'- aGCCUGucCACcGGACGAGugGCGCg -3' miRNA: 3'- gUGGGUuaGUGuUCUGCUUugCGCGg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 26955 | 0.72 | 0.900376 |
Target: 5'- gAUCCGGagGgaaggaAGGGCGggGCGCGCCg -3' miRNA: 3'- gUGGGUUagUg-----UUCUGCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 75375 | 0.72 | 0.900376 |
Target: 5'- gACgCAggCACGGGGCGAccUGCGCCc -3' miRNA: 3'- gUGgGUuaGUGUUCUGCUuuGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 761 | 0.72 | 0.906275 |
Target: 5'- gCGCCCAAaaACAuauacgauuugacAGGCGAGACGacaGCCc -3' miRNA: 3'- -GUGGGUUagUGU-------------UCUGCUUUGCg--CGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 43460 | 0.72 | 0.906917 |
Target: 5'- uCGCCCAgcGUCuuuaaaauaaagACGGGugG-AGCGUGCCg -3' miRNA: 3'- -GUGGGU--UAG------------UGUUCugCuUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 109836 | 0.72 | 0.906917 |
Target: 5'- cCGCCCAAgacgccgcggCGgGAGGCG-GugGCGCCc -3' miRNA: 3'- -GUGGGUUa---------GUgUUCUGCuUugCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 109849 | 0.72 | 0.913203 |
Target: 5'- gGCCCA--CAcCAAGACGGcuauGCGCGCg -3' miRNA: 3'- gUGGGUuaGU-GUUCUGCUu---UGCGCGg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 97196 | 0.71 | 0.91923 |
Target: 5'- aACCCAGUCACGcAGAgGuccAgGCGCUg -3' miRNA: 3'- gUGGGUUAGUGU-UCUgCuu-UgCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 74073 | 0.71 | 0.924999 |
Target: 5'- uCGCCCGAggcuUCugGuuGGGCGAgcgccgggaggAACGCGCUg -3' miRNA: 3'- -GUGGGUU----AGugU--UCUGCU-----------UUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 81337 | 0.71 | 0.935755 |
Target: 5'- -cCCCAAcgGCAAGGCGcaguacgugcGGCGCGCCu -3' miRNA: 3'- guGGGUUagUGUUCUGCu---------UUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 127654 | 0.71 | 0.940743 |
Target: 5'- cCGCCCGAa-ACAAGugGgcGgGCGCUa -3' miRNA: 3'- -GUGGGUUagUGUUCugCuuUgCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 52164 | 0.71 | 0.941228 |
Target: 5'- aGCUCAGUCGCAcgggggguggccuguGGCGuguGCGCGCUg -3' miRNA: 3'- gUGGGUUAGUGUu--------------CUGCuu-UGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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