miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 761 0.72 0.906275
Target:  5'- gCGCCCAAaaACAuauacgauuugacAGGCGAGACGacaGCCc -3'
miRNA:   3'- -GUGGGUUagUGU-------------UCUGCUUUGCg--CGG- -5'
13428 3' -50 NC_003409.1 + 2298 0.67 0.988845
Target:  5'- aCACCCAcuUCcCAAGAUGAuGCuaCGCCu -3'
miRNA:   3'- -GUGGGUu-AGuGUUCUGCUuUGc-GCGG- -5'
13428 3' -50 NC_003409.1 + 2346 0.66 0.997085
Target:  5'- aCACCCAAUUAUAAuACu-AACGCaCCg -3'
miRNA:   3'- -GUGGGUUAGUGUUcUGcuUUGCGcGG- -5'
13428 3' -50 NC_003409.1 + 7520 0.66 0.995883
Target:  5'- uCACCUGGccucgcuguuuacUCACGAGGCuGAcaugcauaaaaGGCGCGUCg -3'
miRNA:   3'- -GUGGGUU-------------AGUGUUCUG-CU-----------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 7731 0.69 0.965382
Target:  5'- uCGCCCAAgCAUccGGCcaGGucGACGCGCCu -3'
miRNA:   3'- -GUGGGUUaGUGuuCUG--CU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 14379 0.68 0.987315
Target:  5'- aCGCCCuAGUgACucAGACGcggAAACaGCGCCu -3'
miRNA:   3'- -GUGGG-UUAgUGu-UCUGC---UUUG-CGCGG- -5'
13428 3' -50 NC_003409.1 + 14679 0.7 0.949951
Target:  5'- -uCCCAGUCACcuAGGAUGA-ACGuUGCCu -3'
miRNA:   3'- guGGGUUAGUG--UUCUGCUuUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 18888 0.66 0.996555
Target:  5'- uGCCCAGUCGgGcGAUGggGCuuauaGUGUCu -3'
miRNA:   3'- gUGGGUUAGUgUuCUGCuuUG-----CGCGG- -5'
13428 3' -50 NC_003409.1 + 20416 0.68 0.983772
Target:  5'- aCAUaacaAGUgACAGGGCGGAA-GCGCCa -3'
miRNA:   3'- -GUGgg--UUAgUGUUCUGCUUUgCGCGG- -5'
13428 3' -50 NC_003409.1 + 21540 0.67 0.988845
Target:  5'- -uCCCAAUUACAGGagaacaGCGAAcgGCGCGg- -3'
miRNA:   3'- guGGGUUAGUGUUC------UGCUU--UGCGCgg -5'
13428 3' -50 NC_003409.1 + 21619 0.66 0.994955
Target:  5'- aUACCCAuguuggguccacaaGUCuaaggccaGCGAGACaagagcguuucguGAAACGUGCCu -3'
miRNA:   3'- -GUGGGU--------------UAG--------UGUUCUG-------------CUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 23395 0.66 0.996555
Target:  5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3'
miRNA:   3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24596 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24656 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24716 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24751 0.67 0.990229
Target:  5'- -uCCCccUCcgGGGAgGggGCGCGCCg -3'
miRNA:   3'- guGGGuuAGugUUCUgCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24776 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24836 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 26008 0.67 0.991355
Target:  5'- aGCCCAcggacgaGUCAUcuGAagGAGACGuCGCCu -3'
miRNA:   3'- gUGGGU-------UAGUGuuCUg-CUUUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 26955 0.72 0.900376
Target:  5'- gAUCCGGagGgaaggaAGGGCGggGCGCGCCg -3'
miRNA:   3'- gUGGGUUagUg-----UUCUGCuuUGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.