miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1343 3' -58.9 NC_001335.1 + 9083 1.07 0.000618
Target:  5'- cAACGGGAACGACGCCCAGACCGUGCGg -3'
miRNA:   3'- -UUGCCCUUGCUGCGGGUCUGGCACGC- -5'
1343 3' -58.9 NC_001335.1 + 41683 0.71 0.264698
Target:  5'- cGugGGGAuCGACGCCUgGGGCCG-GCu -3'
miRNA:   3'- -UugCCCUuGCUGCGGG-UCUGGCaCGc -5'
1343 3' -58.9 NC_001335.1 + 1219 0.7 0.299501
Target:  5'- --aGGGAACGGCaGCgCCGGuACCGgagGCGu -3'
miRNA:   3'- uugCCCUUGCUG-CG-GGUC-UGGCa--CGC- -5'
1343 3' -58.9 NC_001335.1 + 32918 0.69 0.345802
Target:  5'- cGACGGuGACGACgGCCuCGGcuGCUGUGCGc -3'
miRNA:   3'- -UUGCCcUUGCUG-CGG-GUC--UGGCACGC- -5'
1343 3' -58.9 NC_001335.1 + 4534 0.69 0.354001
Target:  5'- gAACGGGGAaaaaGAC-CCCAGGCCcgaaagGCGa -3'
miRNA:   3'- -UUGCCCUUg---CUGcGGGUCUGGca----CGC- -5'
1343 3' -58.9 NC_001335.1 + 17744 0.68 0.397016
Target:  5'- cGACGGGGAcuCGAUGCCCAGgaaGCCcuucacUGCa -3'
miRNA:   3'- -UUGCCCUU--GCUGCGGGUC---UGGc-----ACGc -5'
1343 3' -58.9 NC_001335.1 + 22941 0.67 0.43376
Target:  5'- cGGCGGcGuauCGAgGCCCAGAUCG-GCu -3'
miRNA:   3'- -UUGCC-Cuu-GCUgCGGGUCUGGCaCGc -5'
1343 3' -58.9 NC_001335.1 + 24069 0.67 0.462576
Target:  5'- uGGCGGGAACGGCaauGCuCCuGGCgGcgGCGg -3'
miRNA:   3'- -UUGCCCUUGCUG---CG-GGuCUGgCa-CGC- -5'
1343 3' -58.9 NC_001335.1 + 50760 0.67 0.472403
Target:  5'- -cCGGGGGCGGCGCaCCuuGGGCgCGUuggcucGCGg -3'
miRNA:   3'- uuGCCCUUGCUGCG-GG--UCUG-GCA------CGC- -5'
1343 3' -58.9 NC_001335.1 + 21409 0.66 0.502492
Target:  5'- cGAUGGGucggcaaaGACGAuccUGaCCCAGAgcCCGUGCGu -3'
miRNA:   3'- -UUGCCC--------UUGCU---GC-GGGUCU--GGCACGC- -5'
1343 3' -58.9 NC_001335.1 + 5577 0.66 0.502492
Target:  5'- aGAUcaGGACGAUGCCCAGcaguGCCGggGCGg -3'
miRNA:   3'- -UUGccCUUGCUGCGGGUC----UGGCa-CGC- -5'
1343 3' -58.9 NC_001335.1 + 9709 0.66 0.502492
Target:  5'- cACGcGGGAUGACaCCCuGGCCGuUGCc -3'
miRNA:   3'- uUGC-CCUUGCUGcGGGuCUGGC-ACGc -5'
1343 3' -58.9 NC_001335.1 + 11375 0.66 0.533389
Target:  5'- cGGCGuGAACGAccccaagguCGCgCAGACCG-GCGa -3'
miRNA:   3'- -UUGCcCUUGCU---------GCGgGUCUGGCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.