miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13430 5' -51.5 NC_003409.1 + 105663 1.06 0.010087
Target:  5'- aAAAACUCGGCAUACCAACGGAGGACGc -3'
miRNA:   3'- -UUUUGAGCCGUAUGGUUGCCUCCUGC- -5'
13430 5' -51.5 NC_003409.1 + 30954 0.73 0.775152
Target:  5'- --uGCUCuGCGUGCUggaGGCGGGGGugGg -3'
miRNA:   3'- uuuUGAGcCGUAUGG---UUGCCUCCugC- -5'
13430 5' -51.5 NC_003409.1 + 101726 0.73 0.775152
Target:  5'- ---cCUCuGGCAUACCcuCGGAGGAgGu -3'
miRNA:   3'- uuuuGAG-CCGUAUGGuuGCCUCCUgC- -5'
13430 5' -51.5 NC_003409.1 + 40462 0.72 0.821002
Target:  5'- cGGAACUCGuaacauaGCuuagACCAGCGGAcGGACGc -3'
miRNA:   3'- -UUUUGAGC-------CGua--UGGUUGCCU-CCUGC- -5'
13430 5' -51.5 NC_003409.1 + 56002 0.72 0.830718
Target:  5'- cAAugUCGGCGacCCGugGGAGGuCGc -3'
miRNA:   3'- uUUugAGCCGUauGGUugCCUCCuGC- -5'
13430 5' -51.5 NC_003409.1 + 87171 0.71 0.847766
Target:  5'- -----gUGGUGcGCCGGCGGAGGGCGu -3'
miRNA:   3'- uuuugaGCCGUaUGGUUGCCUCCUGC- -5'
13430 5' -51.5 NC_003409.1 + 113698 0.71 0.863963
Target:  5'- gAGGGCgagaaUGGCGUGCCAGUGGAGGAa- -3'
miRNA:   3'- -UUUUGa----GCCGUAUGGUUGCCUCCUgc -5'
13430 5' -51.5 NC_003409.1 + 128109 0.7 0.879251
Target:  5'- --cACUCGGCGUcguCC-ACGGGGGAg- -3'
miRNA:   3'- uuuUGAGCCGUAu--GGuUGCCUCCUgc -5'
13430 5' -51.5 NC_003409.1 + 24213 0.7 0.879251
Target:  5'- ------gGGCGcGCCAGCGGuGGGCGg -3'
miRNA:   3'- uuuugagCCGUaUGGUUGCCuCCUGC- -5'
13430 5' -51.5 NC_003409.1 + 43111 0.7 0.892889
Target:  5'- uGAACUCGGUAUugacgcaAgCGGCGGcgAGGGCGg -3'
miRNA:   3'- uUUUGAGCCGUA-------UgGUUGCC--UCCUGC- -5'
13430 5' -51.5 NC_003409.1 + 68671 0.69 0.918046
Target:  5'- cGAGugUCGGCcaccaagagagGCCAGCGGAgauGGAUGc -3'
miRNA:   3'- -UUUugAGCCGua---------UGGUUGCCU---CCUGC- -5'
13430 5' -51.5 NC_003409.1 + 66759 0.69 0.91923
Target:  5'- uGAGAUUCGGCcguCCA--GGAGGACa -3'
miRNA:   3'- -UUUUGAGCCGuauGGUugCCUCCUGc -5'
13430 5' -51.5 NC_003409.1 + 35794 0.69 0.91923
Target:  5'- uAGGC-CGGCAgacgcgUCAAUGGGGGACGu -3'
miRNA:   3'- uUUUGaGCCGUau----GGUUGCCUCCUGC- -5'
13430 5' -51.5 NC_003409.1 + 89295 0.68 0.949951
Target:  5'- gAAAAUUC-GCAgGCgCGAUGGAGGGCGc -3'
miRNA:   3'- -UUUUGAGcCGUaUG-GUUGCCUCCUGC- -5'
13430 5' -51.5 NC_003409.1 + 96872 0.68 0.949951
Target:  5'- -uGGCggaGGCGUGCCAAauaugGGAGGAaCGa -3'
miRNA:   3'- uuUUGag-CCGUAUGGUUg----CCUCCU-GC- -5'
13430 5' -51.5 NC_003409.1 + 81226 0.67 0.961886
Target:  5'- -cGACUgUGGCAUAUaCGGCcGAGGACGa -3'
miRNA:   3'- uuUUGA-GCCGUAUG-GUUGcCUCCUGC- -5'
13430 5' -51.5 NC_003409.1 + 65023 0.67 0.971686
Target:  5'- ---uUUCGGCAUACguaaUAACGG-GGACu -3'
miRNA:   3'- uuuuGAGCCGUAUG----GUUGCCuCCUGc -5'
13430 5' -51.5 NC_003409.1 + 23485 0.67 0.974507
Target:  5'- cGGGC-CGGCGgACCAAUGGgagcGGGGCa -3'
miRNA:   3'- uUUUGaGCCGUaUGGUUGCC----UCCUGc -5'
13430 5' -51.5 NC_003409.1 + 119525 0.67 0.974507
Target:  5'- cGGGC-CGGCGgACCAAUGGgagcGGGGCa -3'
miRNA:   3'- uUUUGaGCCGUaUGGUUGCC----UCCUGc -5'
13430 5' -51.5 NC_003409.1 + 65126 0.66 0.977118
Target:  5'- cGAACUCuaGGuCAUACCAGCccaucuccGGGGGCGa -3'
miRNA:   3'- uUUUGAG--CC-GUAUGGUUGc-------CUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.