Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13430 | 5' | -51.5 | NC_003409.1 | + | 96872 | 0.68 | 0.949951 |
Target: 5'- -uGGCggaGGCGUGCCAAauaugGGAGGAaCGa -3' miRNA: 3'- uuUUGag-CCGUAUGGUUg----CCUCCU-GC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 66759 | 0.69 | 0.91923 |
Target: 5'- uGAGAUUCGGCcguCCA--GGAGGACa -3' miRNA: 3'- -UUUUGAGCCGuauGGUugCCUCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 68671 | 0.69 | 0.918046 |
Target: 5'- cGAGugUCGGCcaccaagagagGCCAGCGGAgauGGAUGc -3' miRNA: 3'- -UUUugAGCCGua---------UGGUUGCCU---CCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 87171 | 0.71 | 0.847766 |
Target: 5'- -----gUGGUGcGCCGGCGGAGGGCGu -3' miRNA: 3'- uuuugaGCCGUaUGGUUGCCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 40462 | 0.72 | 0.821002 |
Target: 5'- cGGAACUCGuaacauaGCuuagACCAGCGGAcGGACGc -3' miRNA: 3'- -UUUUGAGC-------CGua--UGGUUGCCU-CCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 101726 | 0.73 | 0.775152 |
Target: 5'- ---cCUCuGGCAUACCcuCGGAGGAgGu -3' miRNA: 3'- uuuuGAG-CCGUAUGGuuGCCUCCUgC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 30954 | 0.73 | 0.775152 |
Target: 5'- --uGCUCuGCGUGCUggaGGCGGGGGugGg -3' miRNA: 3'- uuuUGAGcCGUAUGG---UUGCCUCCugC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 105663 | 1.06 | 0.010087 |
Target: 5'- aAAAACUCGGCAUACCAACGGAGGACGc -3' miRNA: 3'- -UUUUGAGCCGUAUGGUUGCCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 35794 | 0.69 | 0.91923 |
Target: 5'- uAGGC-CGGCAgacgcgUCAAUGGGGGACGu -3' miRNA: 3'- uUUUGaGCCGUau----GGUUGCCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 132666 | 0.66 | 0.977118 |
Target: 5'- ----aUCGGaCAgcGCCAGCcaGGGGGACGg -3' miRNA: 3'- uuuugAGCC-GUa-UGGUUG--CCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 81226 | 0.67 | 0.961886 |
Target: 5'- -cGACUgUGGCAUAUaCGGCcGAGGACGa -3' miRNA: 3'- uuUUGA-GCCGUAUG-GUUGcCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 119525 | 0.67 | 0.974507 |
Target: 5'- cGGGC-CGGCGgACCAAUGGgagcGGGGCa -3' miRNA: 3'- uUUUGaGCCGUaUGGUUGCC----UCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 65023 | 0.67 | 0.971686 |
Target: 5'- ---uUUCGGCAUACguaaUAACGG-GGACu -3' miRNA: 3'- uuuuGAGCCGUAUG----GUUGCCuCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 87608 | 0.66 | 0.985627 |
Target: 5'- uGGGCgugCGGCGgaauCCAACuGGGGGCa -3' miRNA: 3'- uUUUGa--GCCGUau--GGUUGcCUCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 128109 | 0.7 | 0.879251 |
Target: 5'- --cACUCGGCGUcguCC-ACGGGGGAg- -3' miRNA: 3'- uuuUGAGCCGUAu--GGuUGCCUCCUgc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 90878 | 0.66 | 0.983772 |
Target: 5'- gAAAACUCGGauu-CCAGugaGGAGGAUc -3' miRNA: 3'- -UUUUGAGCCguauGGUUg--CCUCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 65126 | 0.66 | 0.977118 |
Target: 5'- cGAACUCuaGGuCAUACCAGCccaucuccGGGGGCGa -3' miRNA: 3'- uUUUGAG--CC-GUAUGGUUGc-------CUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 23485 | 0.67 | 0.974507 |
Target: 5'- cGGGC-CGGCGgACCAAUGGgagcGGGGCa -3' miRNA: 3'- uUUUGaGCCGUaUGGUUGCC----UCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 56002 | 0.72 | 0.830718 |
Target: 5'- cAAugUCGGCGacCCGugGGAGGuCGc -3' miRNA: 3'- uUUugAGCCGUauGGUugCCUCCuGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 113698 | 0.71 | 0.863963 |
Target: 5'- gAGGGCgagaaUGGCGUGCCAGUGGAGGAa- -3' miRNA: 3'- -UUUUGa----GCCGUAUGGUUGCCUCCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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