miRNA: 3'- cAGuGCGACGGU---UGUuACGAGuuCCG- -5'
miRNA: 3'- caGUGCGa--CGGU-----UGUUACGaGUUCCg -5'
miRNA: 3'- caGUG-CGACGGUUGUu--ACGAG-----UUCCG- -5'
miRNA: 3'- caGUGCGACG-----GUUGUUAc-----GAGUUCCG- -5'
Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13438 | 5' | -51.5 | NC_003409.1 | + | 121846 | 0.66 | 0.982128 |
|
Target: 5'- aUC-CGCUGCCAccuGCG-UGUUCccGGCg -3' miRNA: 3'- cAGuGCGACGGU---UGUuACGAGuuCCG- -5' |
|||||||
| 13438 | 5' | -51.5 | NC_003409.1 | + | 24369 | 0.66 | 0.982128 |
|
Target: 5'- -cCACGUgccGCCGcgcgcGCAGUGCgCGAGGg -3' miRNA: 3'- caGUGCGa--CGGU-----UGUUACGaGUUCCg -5' |
|||||||
| 13438 | 5' | -51.5 | NC_003409.1 | + | 14474 | 0.66 | 0.984142 |
|
Target: 5'- -cUACgGUUGCCGACGuguUGUUCuggaaGAGGCa -3' miRNA: 3'- caGUG-CGACGGUUGUu--ACGAG-----UUCCG- -5' |
|||||||
| 13438 | 5' | -51.5 | NC_003409.1 | + | 15548 | 0.66 | 0.984142 |
|
Target: 5'- -cCAUGCUGCucgaaCAGCAAUugaaucCUCAGGGUg -3' miRNA: 3'- caGUGCGACG-----GUUGUUAc-----GAGUUCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home