miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13438 5' -51.5 NC_003409.1 + 5334 0.7 0.879159
Target:  5'- gGUCAgGauaGCCAgaGCAAUGCUCAuGGUu -3'
miRNA:   3'- -CAGUgCga-CGGU--UGUUACGAGUuCCG- -5'
13438 5' -51.5 NC_003409.1 + 8272 0.74 0.69168
Target:  5'- uGUgACGCUGgCu-CAGUGCuUCGAGGCu -3'
miRNA:   3'- -CAgUGCGACgGuuGUUACG-AGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 9795 0.68 0.950361
Target:  5'- -cCACGCUaaacGCCAGCAagGC-CAAacuGGCg -3'
miRNA:   3'- caGUGCGA----CGGUUGUuaCGaGUU---CCG- -5'
13438 5' -51.5 NC_003409.1 + 9886 0.7 0.89292
Target:  5'- gGUCugGCaGCCcauguccGCGAUuaaccugacucacGCUCAGGGCg -3'
miRNA:   3'- -CAGugCGaCGGu------UGUUA-------------CGAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 14474 0.66 0.984142
Target:  5'- -cUACgGUUGCCGACGuguUGUUCuggaaGAGGCa -3'
miRNA:   3'- caGUG-CGACGGUUGUu--ACGAG-----UUCCG- -5'
13438 5' -51.5 NC_003409.1 + 15548 0.66 0.984142
Target:  5'- -cCAUGCUGCucgaaCAGCAAUugaaucCUCAGGGUg -3'
miRNA:   3'- caGUGCGACG-----GUUGUUAc-----GAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 16697 0.71 0.821229
Target:  5'- gGUUACGaucaaagGCCAGCGGUGCggugggggUAAGGCu -3'
miRNA:   3'- -CAGUGCga-----CGGUUGUUACGa-------GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 24212 0.73 0.754041
Target:  5'- --gGCGC-GCCAGCGGUGggCGGGGCc -3'
miRNA:   3'- cagUGCGaCGGUUGUUACgaGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 24369 0.66 0.982128
Target:  5'- -cCACGUgccGCCGcgcgcGCAGUGCgCGAGGg -3'
miRNA:   3'- caGUGCGa--CGGU-----UGUUACGaGUUCCg -5'
13438 5' -51.5 NC_003409.1 + 27227 0.73 0.7128
Target:  5'- aUCACuGCgGcCCAAC--UGCUCGAGGCg -3'
miRNA:   3'- cAGUG-CGaC-GGUUGuuACGAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 31579 0.69 0.919472
Target:  5'- aUCgAUGCUGCUuuguAGC-AUGCUCAggaAGGCg -3'
miRNA:   3'- cAG-UGCGACGG----UUGuUACGAGU---UCCG- -5'
13438 5' -51.5 NC_003409.1 + 34158 0.71 0.855658
Target:  5'- cGUCgGCGaaaaaGUCAGCGGUGgUCGAGGCg -3'
miRNA:   3'- -CAG-UGCga---CGGUUGUUACgAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 39667 0.69 0.9134
Target:  5'- -cCAUGCUGCgCAGCAacacGUGCUUcAGGa -3'
miRNA:   3'- caGUGCGACG-GUUGU----UACGAGuUCCg -5'
13438 5' -51.5 NC_003409.1 + 45470 0.68 0.930822
Target:  5'- uGUCGC-CUGCCuGCAgaAUGUccuUCAAGGUu -3'
miRNA:   3'- -CAGUGcGACGGuUGU--UACG---AGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 46398 0.67 0.969082
Target:  5'- -gCAgGUUGCCAGCugaccAUGaCUCAaaccGGGCa -3'
miRNA:   3'- caGUgCGACGGUUGu----UAC-GAGU----UCCG- -5'
13438 5' -51.5 NC_003409.1 + 48676 0.68 0.9361
Target:  5'- aGUCACGCucgucaaagaUGCCGcucgcgauagACAGUGCUUccGGGUg -3'
miRNA:   3'- -CAGUGCG----------ACGGU----------UGUUACGAGu-UCCG- -5'
13438 5' -51.5 NC_003409.1 + 53552 0.69 0.907066
Target:  5'- -cCACGCacgucgagaaugUGCUAACAggaGUGCUCGAcgacGGCa -3'
miRNA:   3'- caGUGCG------------ACGGUUGU---UACGAGUU----CCG- -5'
13438 5' -51.5 NC_003409.1 + 58572 0.66 0.97493
Target:  5'- uUCACcaaGCUGCCAACuuuUGgUCAAGaaguGCg -3'
miRNA:   3'- cAGUG---CGACGGUUGuu-ACgAGUUC----CG- -5'
13438 5' -51.5 NC_003409.1 + 62974 0.67 0.958583
Target:  5'- cUC-UGCUGCCuguuauCGAUGCUCGAGa- -3'
miRNA:   3'- cAGuGCGACGGuu----GUUACGAGUUCcg -5'
13438 5' -51.5 NC_003409.1 + 72302 0.66 0.972116
Target:  5'- -gCAUGCUGCCAcUAGUGgaCGcuGGCu -3'
miRNA:   3'- caGUGCGACGGUuGUUACgaGUu-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.