miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13438 5' -51.5 NC_003409.1 + 109485 1.12 0.00378
Target:  5'- uGUCACGCUGCCAACAAUGCUCAAGGCu -3'
miRNA:   3'- -CAGUGCGACGGUUGUUACGAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 131501 0.66 0.972116
Target:  5'- uGUCccuCGggGCCAACGGUGCcCAguGGGUg -3'
miRNA:   3'- -CAGu--GCgaCGGUUGUUACGaGU--UCCG- -5'
13438 5' -51.5 NC_003409.1 + 58572 0.66 0.97493
Target:  5'- uUCACcaaGCUGCCAACuuuUGgUCAAGaaguGCg -3'
miRNA:   3'- cAGUG---CGACGGUUGuu-ACgAGUUC----CG- -5'
13438 5' -51.5 NC_003409.1 + 131201 0.66 0.982128
Target:  5'- --aACGCgGCCAugAGcGCguaCGGGGCa -3'
miRNA:   3'- cagUGCGaCGGUugUUaCGa--GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 118853 0.71 0.855658
Target:  5'- -cCACGCUugGCUAACAcgGCUgGAguGGCg -3'
miRNA:   3'- caGUGCGA--CGGUUGUuaCGAgUU--CCG- -5'
13438 5' -51.5 NC_003409.1 + 5334 0.7 0.879159
Target:  5'- gGUCAgGauaGCCAgaGCAAUGCUCAuGGUu -3'
miRNA:   3'- -CAGUgCga-CGGU--UGUUACGAGUuCCG- -5'
13438 5' -51.5 NC_003409.1 + 53552 0.69 0.907066
Target:  5'- -cCACGCacgucgagaaugUGCUAACAggaGUGCUCGAcgacGGCa -3'
miRNA:   3'- caGUGCG------------ACGGUUGU---UACGAGUU----CCG- -5'
13438 5' -51.5 NC_003409.1 + 39667 0.69 0.9134
Target:  5'- -cCAUGCUGCgCAGCAacacGUGCUUcAGGa -3'
miRNA:   3'- caGUGCGACG-GUUGU----UACGAGuUCCg -5'
13438 5' -51.5 NC_003409.1 + 94511 0.68 0.945867
Target:  5'- -cCAuUGCgGCCAGC-AUGCUCAcgaggaauAGGCa -3'
miRNA:   3'- caGU-GCGaCGGUUGuUACGAGU--------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 102493 0.67 0.965819
Target:  5'- -cCGCGCUGCCcucGCAA--CUCAugcGGGCc -3'
miRNA:   3'- caGUGCGACGGu--UGUUacGAGU---UCCG- -5'
13438 5' -51.5 NC_003409.1 + 98751 0.67 0.958583
Target:  5'- cUCGCGCUuUCAACAGUuCUCAgacacuuuggaAGGCa -3'
miRNA:   3'- cAGUGCGAcGGUUGUUAcGAGU-----------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 93365 0.68 0.930822
Target:  5'- uUCA-GCUGCgGAgGAUGUUguGGGCg -3'
miRNA:   3'- cAGUgCGACGgUUgUUACGAguUCCG- -5'
13438 5' -51.5 NC_003409.1 + 127471 0.79 0.422796
Target:  5'- cUUGCGUUGCCAugGAUGCUaccuAGGCa -3'
miRNA:   3'- cAGUGCGACGGUugUUACGAgu--UCCG- -5'
13438 5' -51.5 NC_003409.1 + 88683 0.67 0.962322
Target:  5'- ---uCGCUGCCGGCAG-GCa-GGGGCg -3'
miRNA:   3'- caguGCGACGGUUGUUaCGagUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 8272 0.74 0.69168
Target:  5'- uGUgACGCUGgCu-CAGUGCuUCGAGGCu -3'
miRNA:   3'- -CAgUGCGACgGuuGUUACG-AGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 31579 0.69 0.919472
Target:  5'- aUCgAUGCUGCUuuguAGC-AUGCUCAggaAGGCg -3'
miRNA:   3'- cAG-UGCGACGG----UUGuUACGAGU---UCCG- -5'
13438 5' -51.5 NC_003409.1 + 100887 0.67 0.965819
Target:  5'- gGUCG-GCUGCCuaAACGGcgccUGCcgCAAGGCc -3'
miRNA:   3'- -CAGUgCGACGG--UUGUU----ACGa-GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 127399 0.66 0.972407
Target:  5'- -aCGCGCcGCCAGCAAauuuaaguccuggugGCUCAccugccAGGUa -3'
miRNA:   3'- caGUGCGaCGGUUGUUa--------------CGAGU------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 34158 0.71 0.855658
Target:  5'- cGUCgGCGaaaaaGUCAGCGGUGgUCGAGGCg -3'
miRNA:   3'- -CAG-UGCga---CGGUUGUUACgAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 9886 0.7 0.89292
Target:  5'- gGUCugGCaGCCcauguccGCGAUuaaccugacucacGCUCAGGGCg -3'
miRNA:   3'- -CAGugCGaCGGu------UGUUA-------------CGAGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.