Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13438 | 5' | -51.5 | NC_003409.1 | + | 100887 | 0.67 | 0.965819 |
Target: 5'- gGUCG-GCUGCCuaAACGGcgccUGCcgCAAGGCc -3' miRNA: 3'- -CAGUgCGACGG--UUGUU----ACGa-GUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 98751 | 0.67 | 0.958583 |
Target: 5'- cUCGCGCUuUCAACAGUuCUCAgacacuuuggaAGGCa -3' miRNA: 3'- cAGUGCGAcGGUUGUUAcGAGU-----------UCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 34158 | 0.71 | 0.855658 |
Target: 5'- cGUCgGCGaaaaaGUCAGCGGUGgUCGAGGCg -3' miRNA: 3'- -CAG-UGCga---CGGUUGUUACgAGUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 109533 | 0.69 | 0.921827 |
Target: 5'- gGUCGCGCgggGCCAGCGccaccucccuuggguAcGCgucCGGGGCg -3' miRNA: 3'- -CAGUGCGa--CGGUUGU---------------UaCGa--GUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 97191 | 0.66 | 0.97753 |
Target: 5'- aGUCACGCagagGuCCAgGCGcUGUUCAGGGa -3' miRNA: 3'- -CAGUGCGa---C-GGU-UGUuACGAGUUCCg -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 27227 | 0.73 | 0.7128 |
Target: 5'- aUCACuGCgGcCCAAC--UGCUCGAGGCg -3' miRNA: 3'- cAGUG-CGaC-GGUUGuuACGAGUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 119936 | 0.66 | 0.979927 |
Target: 5'- -gCACGCgGCCAACAuaaaGUGUggauGGCc -3' miRNA: 3'- caGUGCGaCGGUUGU----UACGaguuCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 123762 | 0.66 | 0.97493 |
Target: 5'- aUUugGC-GCCAugGGUGCUgGugugugugggGGGCa -3' miRNA: 3'- cAGugCGaCGGUugUUACGAgU----------UCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 72302 | 0.66 | 0.972116 |
Target: 5'- -gCAUGCUGCCAcUAGUGgaCGcuGGCu -3' miRNA: 3'- caGUGCGACGGUuGUUACgaGUu-CCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 46398 | 0.67 | 0.969082 |
Target: 5'- -gCAgGUUGCCAGCugaccAUGaCUCAaaccGGGCa -3' miRNA: 3'- caGUgCGACGGUUGu----UAC-GAGU----UCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 62974 | 0.67 | 0.958583 |
Target: 5'- cUC-UGCUGCCuguuauCGAUGCUCGAGa- -3' miRNA: 3'- cAGuGCGACGGuu----GUUACGAGUUCcg -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 113463 | 0.68 | 0.9361 |
Target: 5'- -cCAgGCcGCCGACcAUGCU-AGGGCg -3' miRNA: 3'- caGUgCGaCGGUUGuUACGAgUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 109706 | 0.68 | 0.9361 |
Target: 5'- aGUgGCGCauguccGCCGGCAGUGgUCcagcuGAGGCu -3' miRNA: 3'- -CAgUGCGa-----CGGUUGUUACgAG-----UUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 48676 | 0.68 | 0.9361 |
Target: 5'- aGUCACGCucgucaaagaUGCCGcucgcgauagACAGUGCUUccGGGUg -3' miRNA: 3'- -CAGUGCG----------ACGGU----------UGUUACGAGu-UCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 45470 | 0.68 | 0.930822 |
Target: 5'- uGUCGC-CUGCCuGCAgaAUGUccuUCAAGGUu -3' miRNA: 3'- -CAGUGcGACGGuUGU--UACG---AGUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 101519 | 0.69 | 0.925279 |
Target: 5'- -gCGCGCUGCCucaaggggguCGAUGCUagaAGGGg -3' miRNA: 3'- caGUGCGACGGuu--------GUUACGAg--UUCCg -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 115318 | 0.69 | 0.900471 |
Target: 5'- gGUCugcCGCUGCC-GCcAUGgUCGAGGUc -3' miRNA: 3'- -CAGu--GCGACGGuUGuUACgAGUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 16697 | 0.71 | 0.821229 |
Target: 5'- gGUUACGaucaaagGCCAGCGGUGCggugggggUAAGGCu -3' miRNA: 3'- -CAGUGCga-----CGGUUGUUACGa-------GUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 132814 | 0.71 | 0.820327 |
Target: 5'- --gGCGCUGuCCGAUggUGUccgcgucUCGGGGCa -3' miRNA: 3'- cagUGCGAC-GGUUGuuACG-------AGUUCCG- -5' |
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13438 | 5' | -51.5 | NC_003409.1 | + | 24212 | 0.73 | 0.754041 |
Target: 5'- --gGCGC-GCCAGCGGUGggCGGGGCc -3' miRNA: 3'- cagUGCGaCGGUUGUUACgaGUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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