miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13438 5' -51.5 NC_003409.1 + 27227 0.73 0.7128
Target:  5'- aUCACuGCgGcCCAAC--UGCUCGAGGCg -3'
miRNA:   3'- cAGUG-CGaC-GGUUGuuACGAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 48676 0.68 0.9361
Target:  5'- aGUCACGCucgucaaagaUGCCGcucgcgauagACAGUGCUUccGGGUg -3'
miRNA:   3'- -CAGUGCG----------ACGGU----------UGUUACGAGu-UCCG- -5'
13438 5' -51.5 NC_003409.1 + 45470 0.68 0.930822
Target:  5'- uGUCGC-CUGCCuGCAgaAUGUccuUCAAGGUu -3'
miRNA:   3'- -CAGUGcGACGGuUGU--UACG---AGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 101519 0.69 0.925279
Target:  5'- -gCGCGCUGCCucaaggggguCGAUGCUagaAGGGg -3'
miRNA:   3'- caGUGCGACGGuu--------GUUACGAg--UUCCg -5'
13438 5' -51.5 NC_003409.1 + 109533 0.69 0.921827
Target:  5'- gGUCGCGCgggGCCAGCGccaccucccuuggguAcGCgucCGGGGCg -3'
miRNA:   3'- -CAGUGCGa--CGGUUGU---------------UaCGa--GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 115318 0.69 0.900471
Target:  5'- gGUCugcCGCUGCC-GCcAUGgUCGAGGUc -3'
miRNA:   3'- -CAGu--GCGACGGuUGuUACgAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 16697 0.71 0.821229
Target:  5'- gGUUACGaucaaagGCCAGCGGUGCggugggggUAAGGCu -3'
miRNA:   3'- -CAGUGCga-----CGGUUGUUACGa-------GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 132814 0.71 0.820327
Target:  5'- --gGCGCUGuCCGAUggUGUccgcgucUCGGGGCa -3'
miRNA:   3'- cagUGCGAC-GGUUGuuACG-------AGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 24212 0.73 0.754041
Target:  5'- --gGCGC-GCCAGCGGUGggCGGGGCc -3'
miRNA:   3'- cagUGCGaCGGUUGUUACgaGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 109706 0.68 0.9361
Target:  5'- aGUgGCGCauguccGCCGGCAGUGgUCcagcuGAGGCu -3'
miRNA:   3'- -CAgUGCGa-----CGGUUGUUACgAG-----UUCCG- -5'
13438 5' -51.5 NC_003409.1 + 113463 0.68 0.9361
Target:  5'- -cCAgGCcGCCGACcAUGCU-AGGGCg -3'
miRNA:   3'- caGUgCGaCGGUUGuUACGAgUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 62974 0.67 0.958583
Target:  5'- cUC-UGCUGCCuguuauCGAUGCUCGAGa- -3'
miRNA:   3'- cAGuGCGACGGuu----GUUACGAGUUCcg -5'
13438 5' -51.5 NC_003409.1 + 15548 0.66 0.984142
Target:  5'- -cCAUGCUGCucgaaCAGCAAUugaaucCUCAGGGUg -3'
miRNA:   3'- caGUGCGACG-----GUUGUUAc-----GAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 121846 0.66 0.982128
Target:  5'- aUC-CGCUGCCAccuGCG-UGUUCccGGCg -3'
miRNA:   3'- cAGuGCGACGGU---UGUuACGAGuuCCG- -5'
13438 5' -51.5 NC_003409.1 + 24369 0.66 0.982128
Target:  5'- -cCACGUgccGCCGcgcgcGCAGUGCgCGAGGg -3'
miRNA:   3'- caGUGCGa--CGGU-----UGUUACGaGUUCCg -5'
13438 5' -51.5 NC_003409.1 + 119936 0.66 0.979927
Target:  5'- -gCACGCgGCCAACAuaaaGUGUggauGGCc -3'
miRNA:   3'- caGUGCGaCGGUUGU----UACGaguuCCG- -5'
13438 5' -51.5 NC_003409.1 + 97191 0.66 0.97753
Target:  5'- aGUCACGCagagGuCCAgGCGcUGUUCAGGGa -3'
miRNA:   3'- -CAGUGCGa---C-GGU-UGUuACGAGUUCCg -5'
13438 5' -51.5 NC_003409.1 + 123762 0.66 0.97493
Target:  5'- aUUugGC-GCCAugGGUGCUgGugugugugggGGGCa -3'
miRNA:   3'- cAGugCGaCGGUugUUACGAgU----------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 72302 0.66 0.972116
Target:  5'- -gCAUGCUGCCAcUAGUGgaCGcuGGCu -3'
miRNA:   3'- caGUGCGACGGUuGUUACgaGUu-CCG- -5'
13438 5' -51.5 NC_003409.1 + 46398 0.67 0.969082
Target:  5'- -gCAgGUUGCCAGCugaccAUGaCUCAaaccGGGCa -3'
miRNA:   3'- caGUgCGACGGUUGu----UAC-GAGU----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.