miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 48393 0.76 0.362968
Target:  5'- aGGCACGGuauagGGCAguuuacagaaaaucGCGUCAUCGCAACCg -3'
miRNA:   3'- -CCGUGCC-----CUGU--------------CGCAGUGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 50229 0.66 0.907546
Target:  5'- gGGCGaGGGAgCAGCGUCgucaaauGCUACGcuuuACCg -3'
miRNA:   3'- -CCGUgCCCU-GUCGCAG-------UGGUGU----UGGg -5'
13444 5' -56.3 NC_003409.1 + 51125 0.73 0.516848
Target:  5'- aGCccuGgGGGACGGCGUCACCGacACCa -3'
miRNA:   3'- cCG---UgCCCUGUCGCAGUGGUguUGGg -5'
13444 5' -56.3 NC_003409.1 + 51884 0.69 0.736193
Target:  5'- cGCGCaGGGuCAGCGgagaccgcgccacUCACCACAuggcGCUCg -3'
miRNA:   3'- cCGUG-CCCuGUCGC-------------AGUGGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 52521 0.66 0.879977
Target:  5'- cGGCAC-GGACGGUGacugguuagagauuUUAaaACAGCCCg -3'
miRNA:   3'- -CCGUGcCCUGUCGC--------------AGUggUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 54437 0.7 0.717581
Target:  5'- uGCGCGaGGACGcgcaCGUCuCCACGGCCg -3'
miRNA:   3'- cCGUGC-CCUGUc---GCAGuGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 54891 0.68 0.784386
Target:  5'- gGGCgGCGGGugAGgaaaUCGCaCugGACCCg -3'
miRNA:   3'- -CCG-UGCCCugUCgc--AGUG-GugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 56030 0.7 0.711646
Target:  5'- aGGUcCGcGACGGCGUCgACCagggcgucaaugucgGCGACCCg -3'
miRNA:   3'- -CCGuGCcCUGUCGCAG-UGG---------------UGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 56132 0.7 0.687687
Target:  5'- aGCGCcccgugaaugGGGGCAGUGcacgCACCAgGAUCCa -3'
miRNA:   3'- cCGUG----------CCCUGUCGCa---GUGGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 56363 0.66 0.908154
Target:  5'- cGGagauaGGGACGauuauGCcaaaggCGCCACGACCCa -3'
miRNA:   3'- -CCgug--CCCUGU-----CGca----GUGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 57455 0.66 0.882077
Target:  5'- aGCuuGCGaGGACAGCcuguugGUCAuCCACuguuAACCCa -3'
miRNA:   3'- cCG--UGC-CCUGUCG------CAGU-GGUG----UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 60952 0.71 0.657382
Target:  5'- uGGaACGGGGCAGcCGUCGaauuuuUCAgAGCCCu -3'
miRNA:   3'- -CCgUGCCCUGUC-GCAGU------GGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 61312 0.66 0.901976
Target:  5'- uGCAC-GGAUAGUGaCACUAUGGCCa -3'
miRNA:   3'- cCGUGcCCUGUCGCaGUGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 63569 0.68 0.82824
Target:  5'- gGGCAgCGGcuCAGCGUCACCuauuCUCa -3'
miRNA:   3'- -CCGU-GCCcuGUCGCAGUGGuguuGGG- -5'
13444 5' -56.3 NC_003409.1 + 67275 0.77 0.341972
Target:  5'- aGGaugGGGACugGGCGUCACCGCggUCCa -3'
miRNA:   3'- -CCgugCCCUG--UCGCAGUGGUGuuGGG- -5'
13444 5' -56.3 NC_003409.1 + 67808 0.69 0.737164
Target:  5'- gGGUGCGGcGcGCAGgGggCGCCACGaggGCCCu -3'
miRNA:   3'- -CCGUGCC-C-UGUCgCa-GUGGUGU---UGGG- -5'
13444 5' -56.3 NC_003409.1 + 70542 0.66 0.901976
Target:  5'- gGGCGCGG--CAGCugacucaaaaagGUCACUGCcucuGCCCa -3'
miRNA:   3'- -CCGUGCCcuGUCG------------CAGUGGUGu---UGGG- -5'
13444 5' -56.3 NC_003409.1 + 74026 0.66 0.881379
Target:  5'- cGGCAgaGGGACuacuguuGGCaacugCACCACcggGGCCCg -3'
miRNA:   3'- -CCGUg-CCCUG-------UCGca---GUGGUG---UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 75370 0.66 0.895569
Target:  5'- aGGCACGGGGCGaccuGCGccCugUuuGGCCUu -3'
miRNA:   3'- -CCGUGCCCUGU----CGCa-GugGugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 75449 0.76 0.381547
Target:  5'- gGGCGgcUGGGACGGCGUCACCccuuguCAGuucuucCCCa -3'
miRNA:   3'- -CCGU--GCCCUGUCGCAGUGGu-----GUU------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.