miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 3425 0.68 0.818936
Target:  5'- aGGCAUagagguacccgcaGGGAcCAGUGgggGCCGCAgACCCa -3'
miRNA:   3'- -CCGUG-------------CCCU-GUCGCag-UGGUGU-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 9928 0.68 0.784386
Target:  5'- gGGCgacaGCGGGAaccccaCGUCAUCGCcGCCCc -3'
miRNA:   3'- -CCG----UGCCCUguc---GCAGUGGUGuUGGG- -5'
13444 5' -56.3 NC_003409.1 + 13719 0.72 0.596447
Target:  5'- gGGCGuCGGGugAGaCGUCuauuggccuCCGCAggagACCCg -3'
miRNA:   3'- -CCGU-GCCCugUC-GCAGu--------GGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 13880 0.69 0.756387
Target:  5'- --uGCGGGAgccgAGCGUCaagGCCGCGGCCa -3'
miRNA:   3'- ccgUGCCCUg---UCGCAG---UGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 18879 0.66 0.888935
Target:  5'- gGGCgAUGGGGCuuauAGUGUCuccuGCCAUaauaaggcugGACCCu -3'
miRNA:   3'- -CCG-UGCCCUG----UCGCAG----UGGUG----------UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 20177 0.71 0.657382
Target:  5'- aGGCGCggaaaGGGACGuggagugcGCGUCAgCUGCAGCCg -3'
miRNA:   3'- -CCGUG-----CCCUGU--------CGCAGU-GGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 22372 0.7 0.717581
Target:  5'- uGGCACuGGACAGgGaauucUCGCaACAAUCCg -3'
miRNA:   3'- -CCGUGcCCUGUCgC-----AGUGgUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 28636 0.66 0.895569
Target:  5'- aGCACuGGGACuGCccaGUCACCuuGGCUg -3'
miRNA:   3'- cCGUG-CCCUGuCG---CAGUGGugUUGGg -5'
13444 5' -56.3 NC_003409.1 + 30111 0.73 0.536417
Target:  5'- aGGCGacggUGGGGCAaauGUGUCACCAagcGCCCc -3'
miRNA:   3'- -CCGU----GCCCUGU---CGCAGUGGUgu-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 32287 0.7 0.687687
Target:  5'- aGGCugGcGGACAccucccaCGUgGCCAgAGCCCc -3'
miRNA:   3'- -CCGugC-CCUGUc------GCAgUGGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 33602 0.7 0.707676
Target:  5'- aGGCGCGaucGACcGUGUC-CCACAaacaACCCg -3'
miRNA:   3'- -CCGUGCc--CUGuCGCAGuGGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 33981 0.7 0.677619
Target:  5'- gGGCGCgccaGGGACAGCGccCGCCAUgGACUUg -3'
miRNA:   3'- -CCGUG----CCCUGUCGCa-GUGGUG-UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 34440 0.66 0.895569
Target:  5'- uGGCcuGCGGGGgGGaUGUCACUAagggaGGCUCa -3'
miRNA:   3'- -CCG--UGCCCUgUC-GCAGUGGUg----UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 35906 0.68 0.81979
Target:  5'- aGGCGgaagGGGAgGGCG--ACCACAcACCCu -3'
miRNA:   3'- -CCGUg---CCCUgUCGCagUGGUGU-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 36180 0.69 0.737164
Target:  5'- uGGUgACGGGgACAGCaGUCGCCGaugauucucCGAUCCc -3'
miRNA:   3'- -CCG-UGCCC-UGUCG-CAGUGGU---------GUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 38445 0.7 0.717581
Target:  5'- aGGaa-GGGACGGCGcCAUCACGggcGCCa -3'
miRNA:   3'- -CCgugCCCUGUCGCaGUGGUGU---UGGg -5'
13444 5' -56.3 NC_003409.1 + 40796 0.66 0.901976
Target:  5'- aGGCcCcGGGCGGCGgcUCGCCuaauGCAAgCCa -3'
miRNA:   3'- -CCGuGcCCUGUCGC--AGUGG----UGUUgGG- -5'
13444 5' -56.3 NC_003409.1 + 41160 0.67 0.864734
Target:  5'- uGUACGGGcagccucuuguggaACAGauUCGCCACGagcuggcGCCCa -3'
miRNA:   3'- cCGUGCCC--------------UGUCgcAGUGGUGU-------UGGG- -5'
13444 5' -56.3 NC_003409.1 + 41619 0.68 0.818936
Target:  5'- cGGCGCGuaccGGAUucuugaaAGCGUCGCCGCcaggaGACgCg -3'
miRNA:   3'- -CCGUGC----CCUG-------UCGCAGUGGUG-----UUGgG- -5'
13444 5' -56.3 NC_003409.1 + 41998 0.73 0.536417
Target:  5'- uGGCACGGcGCAGCGagACCAgcucucCGugCCa -3'
miRNA:   3'- -CCGUGCCcUGUCGCagUGGU------GUugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.