miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 113325 1.14 0.001226
Target:  5'- gGGCACGGGACAGCGUCACCACAACCCa -3'
miRNA:   3'- -CCGUGCCCUGUCGCAGUGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 13880 0.69 0.756387
Target:  5'- --uGCGGGAgccgAGCGUCaagGCCGCGGCCa -3'
miRNA:   3'- ccgUGCCCUg---UCGCAG---UGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 120445 0.69 0.765841
Target:  5'- aGGCACGGGGCcGCaUCGgaCACAGgCUa -3'
miRNA:   3'- -CCGUGCCCUGuCGcAGUg-GUGUUgGG- -5'
13444 5' -56.3 NC_003409.1 + 91954 0.66 0.901976
Target:  5'- cGGCccagaaACaGGGAC-GCG-UACCGgGACCCu -3'
miRNA:   3'- -CCG------UG-CCCUGuCGCaGUGGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 100516 0.73 0.536417
Target:  5'- uGCACGGGGCu-CGUC-CCGggcCAACCCa -3'
miRNA:   3'- cCGUGCCCUGucGCAGuGGU---GUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 131378 0.71 0.616733
Target:  5'- uGCAgGGGA-GGCGUCACCAgGuUCCa -3'
miRNA:   3'- cCGUgCCCUgUCGCAGUGGUgUuGGG- -5'
13444 5' -56.3 NC_003409.1 + 95907 0.71 0.64723
Target:  5'- cGGCucaGGGcguCGGUGUgCACCAC-GCCCa -3'
miRNA:   3'- -CCGug-CCCu--GUCGCA-GUGGUGuUGGG- -5'
13444 5' -56.3 NC_003409.1 + 60952 0.71 0.657382
Target:  5'- uGGaACGGGGCAGcCGUCGaauuuuUCAgAGCCCu -3'
miRNA:   3'- -CCgUGCCCUGUC-GCAGU------GGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 78273 0.7 0.677619
Target:  5'- ---uCGGGGCAGcCGUgGCUggcGCAGCCCg -3'
miRNA:   3'- ccguGCCCUGUC-GCAgUGG---UGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 67808 0.69 0.737164
Target:  5'- gGGUGCGGcGcGCAGgGggCGCCACGaggGCCCu -3'
miRNA:   3'- -CCGUGCC-C-UGUCgCa-GUGGUGU---UGGG- -5'
13444 5' -56.3 NC_003409.1 + 22372 0.7 0.717581
Target:  5'- uGGCACuGGACAGgGaauucUCGCaACAAUCCg -3'
miRNA:   3'- -CCGUGcCCUGUCgC-----AGUGgUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 108950 0.7 0.677619
Target:  5'- cGGCucCGGGACAGUGgcuccugacacuUC-CCACAuucgACCCc -3'
miRNA:   3'- -CCGu-GCCCUGUCGC------------AGuGGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 121389 0.74 0.497572
Target:  5'- uGGcCACGGG-CGGUucGUCGCUugGACCUg -3'
miRNA:   3'- -CC-GUGCCCuGUCG--CAGUGGugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 121529 0.7 0.721523
Target:  5'- -uUugGGGACcaaauuucuauaauuGGUGUCACCGCGgcagcucuaGCCCu -3'
miRNA:   3'- ccGugCCCUG---------------UCGCAGUGGUGU---------UGGG- -5'
13444 5' -56.3 NC_003409.1 + 51125 0.73 0.516848
Target:  5'- aGCccuGgGGGACGGCGUCACCGacACCa -3'
miRNA:   3'- cCG---UgCCCUGUCGCAGUGGUguUGGg -5'
13444 5' -56.3 NC_003409.1 + 20177 0.71 0.657382
Target:  5'- aGGCGCggaaaGGGACGuggagugcGCGUCAgCUGCAGCCg -3'
miRNA:   3'- -CCGUG-----CCCUGU--------CGCAGU-GGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 51884 0.69 0.736193
Target:  5'- cGCGCaGGGuCAGCGgagaccgcgccacUCACCACAuggcGCUCg -3'
miRNA:   3'- cCGUG-CCCuGUCGC-------------AGUGGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 133783 0.69 0.756387
Target:  5'- gGGCugGGGACccuCGggCACUucCAACCCc -3'
miRNA:   3'- -CCGugCCCUGuc-GCa-GUGGu-GUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 41998 0.73 0.536417
Target:  5'- uGGCACGGcGCAGCGagACCAgcucucCGugCCa -3'
miRNA:   3'- -CCGUGCCcUGUCGCagUGGU------GUugGG- -5'
13444 5' -56.3 NC_003409.1 + 82506 0.71 0.638082
Target:  5'- cGGgGC-GGACAGUGUCGCgcugcaccgaagcgaGCGACCCg -3'
miRNA:   3'- -CCgUGcCCUGUCGCAGUGg--------------UGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.