miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 113325 1.14 0.001226
Target:  5'- gGGCACGGGACAGCGUCACCACAACCCa -3'
miRNA:   3'- -CCGUGCCCUGUCGCAGUGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 67275 0.77 0.341972
Target:  5'- aGGaugGGGACugGGCGUCACCGCggUCCa -3'
miRNA:   3'- -CCgugCCCUG--UCGCAGUGGUGuuGGG- -5'
13444 5' -56.3 NC_003409.1 + 123737 0.77 0.341972
Target:  5'- uGUggGGGGCAGUGUUcUCACGACCCa -3'
miRNA:   3'- cCGugCCCUGUCGCAGuGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 48393 0.76 0.362968
Target:  5'- aGGCACGGuauagGGCAguuuacagaaaaucGCGUCAUCGCAACCg -3'
miRNA:   3'- -CCGUGCC-----CUGU--------------CGCAGUGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 75449 0.76 0.381547
Target:  5'- gGGCGgcUGGGACGGCGUCACCccuuguCAGuucuucCCCa -3'
miRNA:   3'- -CCGU--GCCCUGUCGCAGUGGu-----GUU------GGG- -5'
13444 5' -56.3 NC_003409.1 + 110031 0.75 0.406715
Target:  5'- gGGUACGGuGGCAGUGUugcgccgggcgcCACCGCcuCCCg -3'
miRNA:   3'- -CCGUGCC-CUGUCGCA------------GUGGUGuuGGG- -5'
13444 5' -56.3 NC_003409.1 + 109530 0.74 0.460039
Target:  5'- cGCGCGGGGcCAGCGcCACCu---CCCu -3'
miRNA:   3'- cCGUGCCCU-GUCGCaGUGGuguuGGG- -5'
13444 5' -56.3 NC_003409.1 + 121389 0.74 0.497572
Target:  5'- uGGcCACGGG-CGGUucGUCGCUugGACCUg -3'
miRNA:   3'- -CC-GUGCCCuGUCG--CAGUGGugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 86749 0.73 0.516848
Target:  5'- cGCACGGG-CGGCGUaCGCCcguUAGCCa -3'
miRNA:   3'- cCGUGCCCuGUCGCA-GUGGu--GUUGGg -5'
13444 5' -56.3 NC_003409.1 + 51125 0.73 0.516848
Target:  5'- aGCccuGgGGGACGGCGUCACCGacACCa -3'
miRNA:   3'- cCG---UgCCCUGUCGCAGUGGUguUGGg -5'
13444 5' -56.3 NC_003409.1 + 41998 0.73 0.536417
Target:  5'- uGGCACGGcGCAGCGagACCAgcucucCGugCCa -3'
miRNA:   3'- -CCGUGCCcUGUCGCagUGGU------GUugGG- -5'
13444 5' -56.3 NC_003409.1 + 100516 0.73 0.536417
Target:  5'- uGCACGGGGCu-CGUC-CCGggcCAACCCa -3'
miRNA:   3'- cCGUGCCCUGucGCAGuGGU---GUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 30111 0.73 0.536417
Target:  5'- aGGCGacggUGGGGCAaauGUGUCACCAagcGCCCc -3'
miRNA:   3'- -CCGU----GCCCUGU---CGCAGUGGUgu-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 13719 0.72 0.596447
Target:  5'- gGGCGuCGGGugAGaCGUCuauuggccuCCGCAggagACCCg -3'
miRNA:   3'- -CCGU-GCCCugUC-GCAGu--------GGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 131378 0.71 0.616733
Target:  5'- uGCAgGGGA-GGCGUCACCAgGuUCCa -3'
miRNA:   3'- cCGUgCCCUgUCGCAGUGGUgUuGGG- -5'
13444 5' -56.3 NC_003409.1 + 82506 0.71 0.638082
Target:  5'- cGGgGC-GGACAGUGUCGCgcugcaccgaagcgaGCGACCCg -3'
miRNA:   3'- -CCgUGcCCUGUCGCAGUGg--------------UGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 101121 0.71 0.641132
Target:  5'- gGGUGCGGGAuuUacucucuaaauaugcGGCGUC-CaCACGACCCa -3'
miRNA:   3'- -CCGUGCCCU--G---------------UCGCAGuG-GUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 95907 0.71 0.64723
Target:  5'- cGGCucaGGGcguCGGUGUgCACCAC-GCCCa -3'
miRNA:   3'- -CCGug-CCCu--GUCGCA-GUGGUGuUGGG- -5'
13444 5' -56.3 NC_003409.1 + 20177 0.71 0.657382
Target:  5'- aGGCGCggaaaGGGACGuggagugcGCGUCAgCUGCAGCCg -3'
miRNA:   3'- -CCGUG-----CCCUGU--------CGCAGU-GGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 60952 0.71 0.657382
Target:  5'- uGGaACGGGGCAGcCGUCGaauuuuUCAgAGCCCu -3'
miRNA:   3'- -CCgUGCCCUGUC-GCAGU------GGUgUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.