miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13447 3' -46.5 NC_003409.1 + 112456 0.66 0.999953
Target:  5'- --aAGGUGAGagaccccgugaUCCAGGAGCgACUGGa -3'
miRNA:   3'- ggcUCUACUCg----------AGGUUUUUGaUGACC- -5'
13447 3' -46.5 NC_003409.1 + 71140 0.66 0.999951
Target:  5'- uCUGGGAUGA-CUgCAAAGAUagauuuaugcugaUACUGGa -3'
miRNA:   3'- -GGCUCUACUcGAgGUUUUUG-------------AUGACC- -5'
13447 3' -46.5 NC_003409.1 + 26367 0.66 0.999944
Target:  5'- gCCgGAGAUgGAGCgCCAAGAAauuuuugaacuguuuCUGCUGa -3'
miRNA:   3'- -GG-CUCUA-CUCGaGGUUUUU---------------GAUGACc -5'
13447 3' -46.5 NC_003409.1 + 14021 0.66 0.999937
Target:  5'- cCCGcAGuAUGAGgUCCAGGaccuGACUGCUc- -3'
miRNA:   3'- -GGC-UC-UACUCgAGGUUU----UUGAUGAcc -5'
13447 3' -46.5 NC_003409.1 + 14359 0.66 0.999935
Target:  5'- cUCGGGGUGcucugccAGCUCgGAgcgcAGGCUAcCUGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGgUU----UUUGAU-GACC- -5'
13447 3' -46.5 NC_003409.1 + 82428 0.66 0.999916
Target:  5'- -gGGGGUGGGaUUCCcuGGGCcgACUGGg -3'
miRNA:   3'- ggCUCUACUC-GAGGuuUUUGa-UGACC- -5'
13447 3' -46.5 NC_003409.1 + 24720 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 24680 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 24640 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 24600 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 24560 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 24520 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 24480 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 24440 0.66 0.999887
Target:  5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3'
miRNA:   3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5'
13447 3' -46.5 NC_003409.1 + 32316 0.67 0.999856
Target:  5'- aUCGAGAUaGAGCUCUu---GCUccaGCUuGGg -3'
miRNA:   3'- -GGCUCUA-CUCGAGGuuuuUGA---UGA-CC- -5'
13447 3' -46.5 NC_003409.1 + 121241 0.67 0.999814
Target:  5'- aCGAGGuuUGAGaggcguagacaUCCGugucGACUGCUGGa -3'
miRNA:   3'- gGCUCU--ACUCg----------AGGUuu--UUGAUGACC- -5'
13447 3' -46.5 NC_003409.1 + 32147 0.68 0.999392
Target:  5'- gCCuGGAUGccAGCUCUAGGAAg-GCUGGc -3'
miRNA:   3'- -GGcUCUAC--UCGAGGUUUUUgaUGACC- -5'
13447 3' -46.5 NC_003409.1 + 104363 0.68 0.999245
Target:  5'- cCUGuccGAUGAGC-CCAuAAAACU-CUGGa -3'
miRNA:   3'- -GGCu--CUACUCGaGGU-UUUUGAuGACC- -5'
13447 3' -46.5 NC_003409.1 + 53131 0.68 0.999069
Target:  5'- cCCGGGAcGGGCcgCaCAGAAACacACUGGc -3'
miRNA:   3'- -GGCUCUaCUCGa-G-GUUUUUGa-UGACC- -5'
13447 3' -46.5 NC_003409.1 + 108303 0.68 0.999069
Target:  5'- aCGAGAcGGGuCUCgAGGGACUGucCUGGc -3'
miRNA:   3'- gGCUCUaCUC-GAGgUUUUUGAU--GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.