miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13448 5' -63.9 NC_003409.1 + 115438 1.09 0.000448
Target:  5'- gGCCACCGGCCCCACCCCAUGCUGCCAg -3'
miRNA:   3'- -CGGUGGCCGGGGUGGGGUACGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 133605 0.78 0.090565
Target:  5'- uGCCaccgaACCGGCCCUgggACCCCGUGCgcacaGCCGa -3'
miRNA:   3'- -CGG-----UGGCCGGGG---UGGGGUACGa----CGGU- -5'
13448 5' -63.9 NC_003409.1 + 114559 0.78 0.092906
Target:  5'- gGCCuGCCaGCCCCACCCCGcUGUcGCCAu -3'
miRNA:   3'- -CGG-UGGcCGGGGUGGGGU-ACGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 113773 0.74 0.161174
Target:  5'- gGCCguuggugggaaaACCGGCaCCACCCUGUGCgGCCGa -3'
miRNA:   3'- -CGG------------UGGCCGgGGUGGGGUACGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 84190 0.73 0.205243
Target:  5'- cGCCugacuCCGGCCCC-CUCU-UGCUGCCc -3'
miRNA:   3'- -CGGu----GGCCGGGGuGGGGuACGACGGu -5'
13448 5' -63.9 NC_003409.1 + 51395 0.72 0.215225
Target:  5'- uGCCACCGuuuGgCCCACgUgGUGCUGCCu -3'
miRNA:   3'- -CGGUGGC---CgGGGUGgGgUACGACGGu -5'
13448 5' -63.9 NC_003409.1 + 84895 0.71 0.271508
Target:  5'- cGUguCCGGCUCCACUCCGUuaucGCaGCCAc -3'
miRNA:   3'- -CGguGGCCGGGGUGGGGUA----CGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 67912 0.71 0.277744
Target:  5'- uGCC-CCGGUCCCAgUgUAUGCcGCCAu -3'
miRNA:   3'- -CGGuGGCCGGGGUgGgGUACGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 51139 0.71 0.277744
Target:  5'- cGgUACCGGCCCUaaaaacugGCCCUcuugaAUGUUGCCGa -3'
miRNA:   3'- -CgGUGGCCGGGG--------UGGGG-----UACGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 132754 0.7 0.290558
Target:  5'- uGCCACCGGCUCCACaauccaCCA-GUUacuucGCCAc -3'
miRNA:   3'- -CGGUGGCCGGGGUGg-----GGUaCGA-----CGGU- -5'
13448 5' -63.9 NC_003409.1 + 52413 0.7 0.310641
Target:  5'- uGCCA-CGuCCCCGCCCCuugGCcGCCAc -3'
miRNA:   3'- -CGGUgGCcGGGGUGGGGua-CGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 124373 0.7 0.313397
Target:  5'- uCCACCGucuccugcuccugcuGUUCCACCCCcUGCUGCUc -3'
miRNA:   3'- cGGUGGC---------------CGGGGUGGGGuACGACGGu -5'
13448 5' -63.9 NC_003409.1 + 51997 0.69 0.331762
Target:  5'- cGCCACaGGCCaCC-CCCCGUGCgacugaGCUu -3'
miRNA:   3'- -CGGUGgCCGG-GGuGGGGUACGa-----CGGu -5'
13448 5' -63.9 NC_003409.1 + 87323 0.69 0.353919
Target:  5'- uCCGCCGGCgcaccaCCCACCCCAgagGUgGCa- -3'
miRNA:   3'- cGGUGGCCG------GGGUGGGGUa--CGaCGgu -5'
13448 5' -63.9 NC_003409.1 + 63266 0.68 0.385053
Target:  5'- gGCCugucCCGuauacCCCCACCCUGUGgUGCCc -3'
miRNA:   3'- -CGGu---GGCc----GGGGUGGGGUACgACGGu -5'
13448 5' -63.9 NC_003409.1 + 78443 0.68 0.385053
Target:  5'- gGCUACCgGGCUgCGCCagCCAcgGCUGCCc -3'
miRNA:   3'- -CGGUGG-CCGGgGUGG--GGUa-CGACGGu -5'
13448 5' -63.9 NC_003409.1 + 35392 0.68 0.393115
Target:  5'- aCCGCCGGCUCCucaaguACUCCAccCUGCCc -3'
miRNA:   3'- cGGUGGCCGGGG------UGGGGUacGACGGu -5'
13448 5' -63.9 NC_003409.1 + 24264 0.68 0.417947
Target:  5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3'
miRNA:   3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5'
13448 5' -63.9 NC_003409.1 + 24304 0.68 0.417947
Target:  5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3'
miRNA:   3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5'
13448 5' -63.9 NC_003409.1 + 105045 0.68 0.417947
Target:  5'- aGCCACCGcccacuCCCCcggcgACCCCAgGC-GCCAc -3'
miRNA:   3'- -CGGUGGCc-----GGGG-----UGGGGUaCGaCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.