Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13448 | 5' | -63.9 | NC_003409.1 | + | 115438 | 1.09 | 0.000448 |
Target: 5'- gGCCACCGGCCCCACCCCAUGCUGCCAg -3' miRNA: 3'- -CGGUGGCCGGGGUGGGGUACGACGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 128095 | 0.67 | 0.452494 |
Target: 5'- cUCACCuGcGCCaucaCGCCCCGUGCUGaCAu -3' miRNA: 3'- cGGUGG-C-CGGg---GUGGGGUACGACgGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 116409 | 0.67 | 0.470341 |
Target: 5'- cGCCugCGGUcgguCCCGCCCgGggcGCgaagcGCCAg -3' miRNA: 3'- -CGGugGCCG----GGGUGGGgUa--CGa----CGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 102491 | 0.66 | 0.52588 |
Target: 5'- cGCCGCgCuGCCCuCGCaaCUCAUGCggGCCAu -3' miRNA: 3'- -CGGUG-GcCGGG-GUG--GGGUACGa-CGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 67912 | 0.71 | 0.277744 |
Target: 5'- uGCC-CCGGUCCCAgUgUAUGCcGCCAu -3' miRNA: 3'- -CGGuGGCCGGGGUgGgGUACGaCGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 52413 | 0.7 | 0.310641 |
Target: 5'- uGCCA-CGuCCCCGCCCCuugGCcGCCAc -3' miRNA: 3'- -CGGUgGCcGGGGUGGGGua-CGaCGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 51997 | 0.69 | 0.331762 |
Target: 5'- cGCCACaGGCCaCC-CCCCGUGCgacugaGCUu -3' miRNA: 3'- -CGGUGgCCGG-GGuGGGGUACGa-----CGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 105045 | 0.68 | 0.417947 |
Target: 5'- aGCCACCGcccacuCCCCcggcgACCCCAgGC-GCCAc -3' miRNA: 3'- -CGGUGGCc-----GGGG-----UGGGGUaCGaCGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 24344 | 0.68 | 0.417947 |
Target: 5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3' miRNA: 3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 24544 | 0.68 | 0.417947 |
Target: 5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3' miRNA: 3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 24424 | 0.68 | 0.417947 |
Target: 5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3' miRNA: 3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 24304 | 0.68 | 0.417947 |
Target: 5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3' miRNA: 3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 113773 | 0.74 | 0.161174 |
Target: 5'- gGCCguuggugggaaaACCGGCaCCACCCUGUGCgGCCGa -3' miRNA: 3'- -CGG------------UGGCCGgGGUGGGGUACGaCGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 24464 | 0.68 | 0.417947 |
Target: 5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3' miRNA: 3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 51395 | 0.72 | 0.215225 |
Target: 5'- uGCCACCGuuuGgCCCACgUgGUGCUGCCu -3' miRNA: 3'- -CGGUGGC---CgGGGUGgGgUACGACGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 24264 | 0.68 | 0.417947 |
Target: 5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3' miRNA: 3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 24504 | 0.68 | 0.417947 |
Target: 5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3' miRNA: 3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 94167 | 0.67 | 0.461372 |
Target: 5'- -aCACC-GCCCC-CCCCAgccgGUUGUCGg -3' miRNA: 3'- cgGUGGcCGGGGuGGGGUa---CGACGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 84895 | 0.71 | 0.271508 |
Target: 5'- cGUguCCGGCUCCACUCCGUuaucGCaGCCAc -3' miRNA: 3'- -CGguGGCCGGGGUGGGGUA----CGaCGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 124373 | 0.7 | 0.313397 |
Target: 5'- uCCACCGucuccugcuccugcuGUUCCACCCCcUGCUGCUc -3' miRNA: 3'- cGGUGGC---------------CGGGGUGGGGuACGACGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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