Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13449 | 5' | -59.7 | NC_003409.1 | + | 95682 | 0.67 | 0.667515 |
Target: 5'- aGCACaaAGAGGC-CUCAcaagAGGCGCUc -3' miRNA: 3'- gUGUGggUCUCCGuGGGU----UCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 118551 | 0.67 | 0.667515 |
Target: 5'- gCGCACCCAGGa--ACCCGGcgcGGCGCa- -3' miRNA: 3'- -GUGUGGGUCUccgUGGGUU---CCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 87720 | 0.67 | 0.64723 |
Target: 5'- -uCAgCCAGGGuGCACCUcuGGCGCc- -3' miRNA: 3'- guGUgGGUCUC-CGUGGGuuCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 87647 | 0.67 | 0.637066 |
Target: 5'- -cCGCCgGGAaaccGGUGCCgAAGGCGCUu -3' miRNA: 3'- guGUGGgUCU----CCGUGGgUUCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 112134 | 0.68 | 0.586339 |
Target: 5'- cCACGCCCGGGGGCcaggACUCAcuGGGgGUc- -3' miRNA: 3'- -GUGUGGGUCUCCG----UGGGU--UCCgCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 132568 | 0.68 | 0.576263 |
Target: 5'- gGCGCCCAGA-GUGCCCGAcacGGUGgaGg -3' miRNA: 3'- gUGUGGGUCUcCGUGGGUU---CCGCgaC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 14961 | 0.69 | 0.516848 |
Target: 5'- cUACACuCCGcGAGGCACCCcuaccgucgcgcGAGaCGCUGg -3' miRNA: 3'- -GUGUG-GGU-CUCCGUGGG------------UUCcGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 70398 | 0.69 | 0.526598 |
Target: 5'- --uGCCCAGcGGUACCCAaaaucgccaGGGCGUg- -3' miRNA: 3'- gugUGGGUCuCCGUGGGU---------UCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 87383 | 0.69 | 0.546298 |
Target: 5'- gCAUACCC--GGGCG-CgGGGGCGCUGg -3' miRNA: 3'- -GUGUGGGucUCCGUgGgUUCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 12589 | 0.68 | 0.586339 |
Target: 5'- cCACcaACCCAGAGGCGguUCCGauGGGgGCa- -3' miRNA: 3'- -GUG--UGGGUCUCCGU--GGGU--UCCgCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 38603 | 0.67 | 0.626898 |
Target: 5'- uGCAUCCAGccaaguuGCGCgCCGAGGCGCc- -3' miRNA: 3'- gUGUGGGUCuc-----CGUG-GGUUCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 104644 | 0.67 | 0.64723 |
Target: 5'- cCGCGCCUAguGAGGCACCauu-GCGCa- -3' miRNA: 3'- -GUGUGGGU--CUCCGUGGguucCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 108178 | 0.7 | 0.482386 |
Target: 5'- aCACGCCaucacucagcucuuaCAGcAGGCACCCAgugcgaucucgGGGCGCc- -3' miRNA: 3'- -GUGUGG---------------GUC-UCCGUGGGU-----------UCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 48159 | 0.7 | 0.469285 |
Target: 5'- --aGCCCGuuGuGGCACCUGAGGUGCUc -3' miRNA: 3'- gugUGGGU--CuCCGUGGGUUCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 33928 | 0.7 | 0.441843 |
Target: 5'- gGCuCCCuuauugAGAGGCGCCagCGAGGCGCg- -3' miRNA: 3'- gUGuGGG------UCUCCGUGG--GUUCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 109349 | 0.71 | 0.405859 |
Target: 5'- cCGC-CCCGGAcGcGUACCCAAgggagguGGCGCUGg -3' miRNA: 3'- -GUGuGGGUCU-C-CGUGGGUU-------CCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 118796 | 0.72 | 0.349645 |
Target: 5'- -cCACCCAGAGGCGagauUCCAGGGcCGUg- -3' miRNA: 3'- guGUGGGUCUCCGU----GGGUUCC-GCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 79270 | 0.73 | 0.334421 |
Target: 5'- gACAgccuUCCAGAGGguCaCCGAGGCGCUu -3' miRNA: 3'- gUGU----GGGUCUCCguG-GGUUCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 72785 | 0.73 | 0.326993 |
Target: 5'- cCAUGCgCAGAGGCAuCCCAAGGCa--- -3' miRNA: 3'- -GUGUGgGUCUCCGU-GGGUUCCGcgac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 52345 | 0.65 | 0.726433 |
Target: 5'- uCGCACUuuuUAGAGGCguGCCUAguguuacGGGgGCUGg -3' miRNA: 3'- -GUGUGG---GUCUCCG--UGGGU-------UCCgCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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