Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13449 | 5' | -59.7 | NC_003409.1 | + | 67814 | 0.66 | 0.691701 |
Target: 5'- gGCGCgCAGgGGGCGCCacgagggcccuucauCAGGGuCGCUGu -3' miRNA: 3'- gUGUGgGUC-UCCGUGG---------------GUUCC-GCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 133207 | 0.75 | 0.224669 |
Target: 5'- gGC-CCCGgugguGAGGCACCUGcAGGCGCUGg -3' miRNA: 3'- gUGuGGGU-----CUCCGUGGGU-UCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 131741 | 0.67 | 0.671561 |
Target: 5'- gGCACUgGuuGAGGUGCCCcagguacacuugucaGAGGUGCUGc -3' miRNA: 3'- gUGUGGgU--CUCCGUGGG---------------UUCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24713 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24673 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 46469 | 0.66 | 0.687687 |
Target: 5'- gCACGCCCccGGGGGUugCUggGG-GuCUGg -3' miRNA: 3'- -GUGUGGG--UCUCCGugGGuuCCgC-GAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 95682 | 0.67 | 0.667515 |
Target: 5'- aGCACaaAGAGGC-CUCAcaagAGGCGCUc -3' miRNA: 3'- gUGUGggUCUCCGuGGGU----UCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 87720 | 0.67 | 0.64723 |
Target: 5'- -uCAgCCAGGGuGCACCUcuGGCGCc- -3' miRNA: 3'- guGUgGGUCUC-CGUGGGuuCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 87647 | 0.67 | 0.637066 |
Target: 5'- -cCGCCgGGAaaccGGUGCCgAAGGCGCUu -3' miRNA: 3'- guGUGGgUCU----CCGUGGgUUCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 112134 | 0.68 | 0.586339 |
Target: 5'- cCACGCCCGGGGGCcaggACUCAcuGGGgGUc- -3' miRNA: 3'- -GUGUGGGUCUCCG----UGGGU--UCCgCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 132568 | 0.68 | 0.576263 |
Target: 5'- gGCGCCCAGA-GUGCCCGAcacGGUGgaGg -3' miRNA: 3'- gUGUGGGUCUcCGUGGGUU---CCGCgaC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 77253 | 0.68 | 0.556237 |
Target: 5'- cCGCGCCCAGGGGCagACCCAaaaAGGaC-CUu -3' miRNA: 3'- -GUGUGGGUCUCCG--UGGGU---UCC-GcGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 85240 | 0.68 | 0.556237 |
Target: 5'- --aACCCuuuuGGGGCGCCUggGGCGa-- -3' miRNA: 3'- gugUGGGu---CUCCGUGGGuuCCGCgac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 105560 | 0.69 | 0.526598 |
Target: 5'- gGCGagaCCAG-GGUGCCCAGcgauuccugacuGGCGCUGg -3' miRNA: 3'- gUGUg--GGUCuCCGUGGGUU------------CCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24433 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24473 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24513 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24553 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24593 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24633 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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