miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13449 5' -59.7 NC_003409.1 + 115795 1.07 0.001488
Target:  5'- gCACACCCAGAGGCACCCAAGGCGCUGc -3'
miRNA:   3'- -GUGUGGGUCUCCGUGGGUUCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 123599 0.66 0.697709
Target:  5'- aCACACaCCA---GCACCCAuGGCGCc- -3'
miRNA:   3'- -GUGUG-GGUcucCGUGGGUuCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 35618 0.66 0.707676
Target:  5'- -cCGCCCAGAccucucauacGGCACCCuuccgaaaAAGGCaGCa- -3'
miRNA:   3'- guGUGGGUCU----------CCGUGGG--------UUCCG-CGac -5'
13449 5' -59.7 NC_003409.1 + 52345 0.65 0.726433
Target:  5'- uCGCACUuuuUAGAGGCguGCCUAguguuacGGGgGCUGg -3'
miRNA:   3'- -GUGUGG---GUCUCCG--UGGGU-------UCCgCGAC- -5'
13449 5' -59.7 NC_003409.1 + 109349 0.71 0.405859
Target:  5'- cCGC-CCCGGAcGcGUACCCAAgggagguGGCGCUGg -3'
miRNA:   3'- -GUGuGGGUCU-C-CGUGGGUU-------CCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 33928 0.7 0.441843
Target:  5'- gGCuCCCuuauugAGAGGCGCCagCGAGGCGCg- -3'
miRNA:   3'- gUGuGGG------UCUCCGUGG--GUUCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 108178 0.7 0.482386
Target:  5'- aCACGCCaucacucagcucuuaCAGcAGGCACCCAgugcgaucucgGGGCGCc- -3'
miRNA:   3'- -GUGUGG---------------GUC-UCCGUGGGU-----------UCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 14961 0.69 0.516848
Target:  5'- cUACACuCCGcGAGGCACCCcuaccgucgcgcGAGaCGCUGg -3'
miRNA:   3'- -GUGUG-GGU-CUCCGUGGG------------UUCcGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 12589 0.68 0.586339
Target:  5'- cCACcaACCCAGAGGCGguUCCGauGGGgGCa- -3'
miRNA:   3'- -GUG--UGGGUCUCCGU--GGGU--UCCgCGac -5'
13449 5' -59.7 NC_003409.1 + 67814 0.66 0.691701
Target:  5'- gGCGCgCAGgGGGCGCCacgagggcccuucauCAGGGuCGCUGu -3'
miRNA:   3'- gUGUGgGUC-UCCGUGG---------------GUUCC-GCGAC- -5'
13449 5' -59.7 NC_003409.1 + 104644 0.67 0.64723
Target:  5'- cCGCGCCUAguGAGGCACCauu-GCGCa- -3'
miRNA:   3'- -GUGUGGGU--CUCCGUGGguucCGCGac -5'
13449 5' -59.7 NC_003409.1 + 87383 0.69 0.546298
Target:  5'- gCAUACCC--GGGCG-CgGGGGCGCUGg -3'
miRNA:   3'- -GUGUGGGucUCCGUgGgUUCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 72785 0.73 0.326993
Target:  5'- cCAUGCgCAGAGGCAuCCCAAGGCa--- -3'
miRNA:   3'- -GUGUGgGUCUCCGU-GGGUUCCGcgac -5'
13449 5' -59.7 NC_003409.1 + 133301 0.67 0.667515
Target:  5'- gACugCCAGGGcGUugCCAGGaGUGgUGg -3'
miRNA:   3'- gUGugGGUCUC-CGugGGUUC-CGCgAC- -5'
13449 5' -59.7 NC_003409.1 + 79270 0.73 0.334421
Target:  5'- gACAgccuUCCAGAGGguCaCCGAGGCGCUu -3'
miRNA:   3'- gUGU----GGGUCUCCguG-GGUUCCGCGAc -5'
13449 5' -59.7 NC_003409.1 + 70398 0.69 0.526598
Target:  5'- --uGCCCAGcGGUACCCAaaaucgccaGGGCGUg- -3'
miRNA:   3'- gugUGGGUCuCCGUGGGU---------UCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 31952 0.66 0.677619
Target:  5'- cCACuguGCCgCGucGGCGcCCCAGGGCGCa- -3'
miRNA:   3'- -GUG---UGG-GUcuCCGU-GGGUUCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 94258 0.66 0.707676
Target:  5'- aCACACCCAuaacccGGGacaGCACCCA-GGCaCUGu -3'
miRNA:   3'- -GUGUGGGU------CUC---CGUGGGUuCCGcGAC- -5'
13449 5' -59.7 NC_003409.1 + 118796 0.72 0.349645
Target:  5'- -cCACCCAGAGGCGagauUCCAGGGcCGUg- -3'
miRNA:   3'- guGUGGGUCUCCGU----GGGUUCC-GCGac -5'
13449 5' -59.7 NC_003409.1 + 48159 0.7 0.469285
Target:  5'- --aGCCCGuuGuGGCACCUGAGGUGCUc -3'
miRNA:   3'- gugUGGGU--CuCCGUGGGUUCCGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.