Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13449 | 5' | -59.7 | NC_003409.1 | + | 134342 | 0.7 | 0.469285 |
Target: 5'- -gUACCCGGuGGCACCgGAGGCuacuaucuGCUa -3' miRNA: 3'- guGUGGGUCuCCGUGGgUUCCG--------CGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 133301 | 0.67 | 0.667515 |
Target: 5'- gACugCCAGGGcGUugCCAGGaGUGgUGg -3' miRNA: 3'- gUGugGGUCUC-CGugGGUUC-CGCgAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 133207 | 0.75 | 0.224669 |
Target: 5'- gGC-CCCGgugguGAGGCACCUGcAGGCGCUGg -3' miRNA: 3'- gUGuGGGU-----CUCCGUGGGU-UCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 132568 | 0.68 | 0.576263 |
Target: 5'- gGCGCCCAGA-GUGCCCGAcacGGUGgaGg -3' miRNA: 3'- gUGUGGGUCUcCGUGGGUU---CCGCgaC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 131741 | 0.67 | 0.671561 |
Target: 5'- gGCACUgGuuGAGGUGCCCcagguacacuugucaGAGGUGCUGc -3' miRNA: 3'- gUGUGGgU--CUCCGUGGG---------------UUCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 123599 | 0.66 | 0.697709 |
Target: 5'- aCACACaCCA---GCACCCAuGGCGCc- -3' miRNA: 3'- -GUGUG-GGUcucCGUGGGUuCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 118796 | 0.72 | 0.349645 |
Target: 5'- -cCACCCAGAGGCGagauUCCAGGGcCGUg- -3' miRNA: 3'- guGUGGGUCUCCGU----GGGUUCC-GCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 118551 | 0.67 | 0.667515 |
Target: 5'- gCGCACCCAGGa--ACCCGGcgcGGCGCa- -3' miRNA: 3'- -GUGUGGGUCUccgUGGGUU---CCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 115795 | 1.07 | 0.001488 |
Target: 5'- gCACACCCAGAGGCACCCAAGGCGCUGc -3' miRNA: 3'- -GUGUGGGUCUCCGUGGGUUCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 112134 | 0.68 | 0.586339 |
Target: 5'- cCACGCCCGGGGGCcaggACUCAcuGGGgGUc- -3' miRNA: 3'- -GUGUGGGUCUCCG----UGGGU--UCCgCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 109456 | 0.7 | 0.45089 |
Target: 5'- gCGCGCCCAGcuAGGUAgaCAAGGUGCg- -3' miRNA: 3'- -GUGUGGGUC--UCCGUggGUUCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 109349 | 0.71 | 0.405859 |
Target: 5'- cCGC-CCCGGAcGcGUACCCAAgggagguGGCGCUGg -3' miRNA: 3'- -GUGuGGGUCU-C-CGUGGGUU-------CCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 108178 | 0.7 | 0.482386 |
Target: 5'- aCACGCCaucacucagcucuuaCAGcAGGCACCCAgugcgaucucgGGGCGCc- -3' miRNA: 3'- -GUGUGG---------------GUC-UCCGUGGGU-----------UCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 107650 | 0.66 | 0.707676 |
Target: 5'- cCGCugCCAG-GGCAuCCCAgucagcGGGcCGCa- -3' miRNA: 3'- -GUGugGGUCuCCGU-GGGU------UCC-GCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 105560 | 0.69 | 0.526598 |
Target: 5'- gGCGagaCCAG-GGUGCCCAGcgauuccugacuGGCGCUGg -3' miRNA: 3'- gUGUg--GGUCuCCGUGGGUU------------CCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 104644 | 0.67 | 0.64723 |
Target: 5'- cCGCGCCUAguGAGGCACCauu-GCGCa- -3' miRNA: 3'- -GUGUGGGU--CUCCGUGGguucCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 95682 | 0.67 | 0.667515 |
Target: 5'- aGCACaaAGAGGC-CUCAcaagAGGCGCUc -3' miRNA: 3'- gUGUGggUCUCCGuGGGU----UCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 94258 | 0.66 | 0.707676 |
Target: 5'- aCACACCCAuaacccGGGacaGCACCCA-GGCaCUGu -3' miRNA: 3'- -GUGUGGGU------CUC---CGUGGGUuCCGcGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 90248 | 0.66 | 0.717581 |
Target: 5'- gACA-CgAGAGGCcuACCaCGAGGCGCa- -3' miRNA: 3'- gUGUgGgUCUCCG--UGG-GUUCCGCGac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 87720 | 0.67 | 0.64723 |
Target: 5'- -uCAgCCAGGGuGCACCUcuGGCGCc- -3' miRNA: 3'- guGUgGGUCUC-CGUGGGuuCCGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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