Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13449 | 5' | -59.7 | NC_003409.1 | + | 24593 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24633 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 24713 | 0.72 | 0.349645 |
Target: 5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3' miRNA: 3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 79270 | 0.73 | 0.334421 |
Target: 5'- gACAgccuUCCAGAGGguCaCCGAGGCGCUu -3' miRNA: 3'- gUGU----GGGUCUCCguG-GGUUCCGCGAc -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 72785 | 0.73 | 0.326993 |
Target: 5'- cCAUGCgCAGAGGCAuCCCAAGGCa--- -3' miRNA: 3'- -GUGUGgGUCUCCGU-GGGUUCCGcgac -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 133207 | 0.75 | 0.224669 |
Target: 5'- gGC-CCCGgugguGAGGCACCUGcAGGCGCUGg -3' miRNA: 3'- gUGuGGGU-----CUCCGUGGGU-UCCGCGAC- -5' |
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13449 | 5' | -59.7 | NC_003409.1 | + | 115795 | 1.07 | 0.001488 |
Target: 5'- gCACACCCAGAGGCACCCAAGGCGCUGc -3' miRNA: 3'- -GUGUGGGUCUCCGUGGGUUCCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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