miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13449 5' -59.7 NC_003409.1 + 112134 0.68 0.586339
Target:  5'- cCACGCCCGGGGGCcaggACUCAcuGGGgGUc- -3'
miRNA:   3'- -GUGUGGGUCUCCG----UGGGU--UCCgCGac -5'
13449 5' -59.7 NC_003409.1 + 132568 0.68 0.576263
Target:  5'- gGCGCCCAGA-GUGCCCGAcacGGUGgaGg -3'
miRNA:   3'- gUGUGGGUCUcCGUGGGUU---CCGCgaC- -5'
13449 5' -59.7 NC_003409.1 + 85240 0.68 0.556237
Target:  5'- --aACCCuuuuGGGGCGCCUggGGCGa-- -3'
miRNA:   3'- gugUGGGu---CUCCGUGGGuuCCGCgac -5'
13449 5' -59.7 NC_003409.1 + 77253 0.68 0.556237
Target:  5'- cCGCGCCCAGGGGCagACCCAaaaAGGaC-CUu -3'
miRNA:   3'- -GUGUGGGUCUCCG--UGGGU---UCC-GcGAc -5'
13449 5' -59.7 NC_003409.1 + 87383 0.69 0.546298
Target:  5'- gCAUACCC--GGGCG-CgGGGGCGCUGg -3'
miRNA:   3'- -GUGUGGGucUCCGUgGgUUCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 105560 0.69 0.526598
Target:  5'- gGCGagaCCAG-GGUGCCCAGcgauuccugacuGGCGCUGg -3'
miRNA:   3'- gUGUg--GGUCuCCGUGGGUU------------CCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 70398 0.69 0.526598
Target:  5'- --uGCCCAGcGGUACCCAaaaucgccaGGGCGUg- -3'
miRNA:   3'- gugUGGGUCuCCGUGGGU---------UCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 14961 0.69 0.516848
Target:  5'- cUACACuCCGcGAGGCACCCcuaccgucgcgcGAGaCGCUGg -3'
miRNA:   3'- -GUGUG-GGU-CUCCGUGGG------------UUCcGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 108178 0.7 0.482386
Target:  5'- aCACGCCaucacucagcucuuaCAGcAGGCACCCAgugcgaucucgGGGCGCc- -3'
miRNA:   3'- -GUGUGG---------------GUC-UCCGUGGGU-----------UCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 134342 0.7 0.469285
Target:  5'- -gUACCCGGuGGCACCgGAGGCuacuaucuGCUa -3'
miRNA:   3'- guGUGGGUCuCCGUGGgUUCCG--------CGAc -5'
13449 5' -59.7 NC_003409.1 + 48159 0.7 0.469285
Target:  5'- --aGCCCGuuGuGGCACCUGAGGUGCUc -3'
miRNA:   3'- gugUGGGU--CuCCGUGGGUUCCGCGAc -5'
13449 5' -59.7 NC_003409.1 + 109456 0.7 0.45089
Target:  5'- gCGCGCCCAGcuAGGUAgaCAAGGUGCg- -3'
miRNA:   3'- -GUGUGGGUC--UCCGUggGUUCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 33928 0.7 0.441843
Target:  5'- gGCuCCCuuauugAGAGGCGCCagCGAGGCGCg- -3'
miRNA:   3'- gUGuGGG------UCUCCGUGG--GUUCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 109349 0.71 0.405859
Target:  5'- cCGC-CCCGGAcGcGUACCCAAgggagguGGCGCUGg -3'
miRNA:   3'- -GUGuGGGUCU-C-CGUGGGUU-------CCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 24593 0.72 0.349645
Target:  5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3'
miRNA:   3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 118796 0.72 0.349645
Target:  5'- -cCACCCAGAGGCGagauUCCAGGGcCGUg- -3'
miRNA:   3'- guGUGGGUCUCCGU----GGGUUCC-GCGac -5'
13449 5' -59.7 NC_003409.1 + 24633 0.72 0.349645
Target:  5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3'
miRNA:   3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 24433 0.72 0.349645
Target:  5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3'
miRNA:   3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 24673 0.72 0.349645
Target:  5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3'
miRNA:   3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 24713 0.72 0.349645
Target:  5'- uGCugCCGG-GGCuCCUggGGUGCUGc -3'
miRNA:   3'- gUGugGGUCuCCGuGGGuuCCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.