miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13451 5' -54.8 NC_003409.1 + 52163 0.66 0.930439
Target:  5'- gCUCAGucGCAcgGG-GGGUGGccuguggcgugUGCGCg -3'
miRNA:   3'- gGAGUC--UGUuaCCaCCCGCU-----------ACGCGa -5'
13451 5' -54.8 NC_003409.1 + 30964 0.66 0.919468
Target:  5'- gCUggAGGCGggGGUGGGUucagcggguGGUGCGCc -3'
miRNA:   3'- -GGagUCUGUuaCCACCCG---------CUACGCGa -5'
13451 5' -54.8 NC_003409.1 + 119799 0.66 0.913614
Target:  5'- --cCAGGCGccgGcGUGGGCGccGCGCg -3'
miRNA:   3'- ggaGUCUGUua-C-CACCCGCuaCGCGa -5'
13451 5' -54.8 NC_003409.1 + 20182 0.66 0.907515
Target:  5'- -gUCAGA--GUGGUGGGCGucaagGCGg- -3'
miRNA:   3'- ggAGUCUguUACCACCCGCua---CGCga -5'
13451 5' -54.8 NC_003409.1 + 75381 0.66 0.907515
Target:  5'- aCUaCAGACGcaGGcacgGGGCGAccUGCGCc -3'
miRNA:   3'- gGA-GUCUGUuaCCa---CCCGCU--ACGCGa -5'
13451 5' -54.8 NC_003409.1 + 54874 0.68 0.850293
Target:  5'- uCCUCGGGCAG-GGUuucGGGCGgcGgGUg -3'
miRNA:   3'- -GGAGUCUGUUaCCA---CCCGCuaCgCGa -5'
13451 5' -54.8 NC_003409.1 + 116853 0.68 0.84216
Target:  5'- gCCUUGGGCAAcGGUGGGauuuucugugGAUGgGCa -3'
miRNA:   3'- -GGAGUCUGUUaCCACCCg---------CUACgCGa -5'
13451 5' -54.8 NC_003409.1 + 134484 0.69 0.780166
Target:  5'- aCUaCAGAgGGUGuccccggGGGCGGUGCGCc -3'
miRNA:   3'- gGA-GUCUgUUACca-----CCCGCUACGCGa -5'
13451 5' -54.8 NC_003409.1 + 67793 0.69 0.780166
Target:  5'- -gUC-GACGAUcgcGGUGGGUGcgGCGCg -3'
miRNA:   3'- ggAGuCUGUUA---CCACCCGCuaCGCGa -5'
13451 5' -54.8 NC_003409.1 + 87158 0.72 0.629006
Target:  5'- aCCUCuGg----GGUGGGUGGUGCGCc -3'
miRNA:   3'- -GGAGuCuguuaCCACCCGCUACGCGa -5'
13451 5' -54.8 NC_003409.1 + 67683 0.73 0.586505
Target:  5'- uCCUCGGACGAggguggcUGGUGGGaaaaaugGCGCg -3'
miRNA:   3'- -GGAGUCUGUU-------ACCACCCgcua---CGCGa -5'
13451 5' -54.8 NC_003409.1 + 116723 1.09 0.003288
Target:  5'- gCCUCAGACAAUGGUGGGCGAUGCGCUc -3'
miRNA:   3'- -GGAGUCUGUUACCACCCGCUACGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.