miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13452 3' -55.6 NC_003409.1 + 73942 0.66 0.901222
Target:  5'- aACCUGcaACAaCGUAAcGCAUUGCGGUGg -3'
miRNA:   3'- -UGGGCc-UGUgGCGUU-CGUAACGUCAC- -5'
13452 3' -55.6 NC_003409.1 + 118499 0.66 0.901222
Target:  5'- cGCCgGGGUACUGCAGGguUcGCAGg- -3'
miRNA:   3'- -UGGgCCUGUGGCGUUCguAaCGUCac -5'
13452 3' -55.6 NC_003409.1 + 6532 0.66 0.894613
Target:  5'- cCCCGGGCGuCC-CAAGCc-UGaCAGUGg -3'
miRNA:   3'- uGGGCCUGU-GGcGUUCGuaAC-GUCAC- -5'
13452 3' -55.6 NC_003409.1 + 105214 0.66 0.894613
Target:  5'- cGCCUGGGguCGCCGgGGGaguggGCGGUGg -3'
miRNA:   3'- -UGGGCCU--GUGGCgUUCguaa-CGUCAC- -5'
13452 3' -55.6 NC_003409.1 + 87386 0.66 0.887766
Target:  5'- uACCCGGGCG-CGgGGGCGcuggGCGGUu -3'
miRNA:   3'- -UGGGCCUGUgGCgUUCGUaa--CGUCAc -5'
13452 3' -55.6 NC_003409.1 + 95063 0.66 0.880684
Target:  5'- cGCCUGauACACCGC---CGUUGCGGUGg -3'
miRNA:   3'- -UGGGCc-UGUGGCGuucGUAACGUCAC- -5'
13452 3' -55.6 NC_003409.1 + 110115 0.66 0.86507
Target:  5'- aACCCGGACACCgGCAucuugccAGCGccGcCAGa- -3'
miRNA:   3'- -UGGGCCUGUGG-CGU-------UCGUaaC-GUCac -5'
13452 3' -55.6 NC_003409.1 + 90485 0.67 0.85808
Target:  5'- aGCCCGGAgGCgacacggaUGCAAGCGgcGUGGUa -3'
miRNA:   3'- -UGGGCCUgUG--------GCGUUCGUaaCGUCAc -5'
13452 3' -55.6 NC_003409.1 + 60847 0.67 0.850112
Target:  5'- uGCCacguuccggUGGACGCCGCGGGCccgGuUAGUGg -3'
miRNA:   3'- -UGG---------GCCUGUGGCGUUCGuaaC-GUCAC- -5'
13452 3' -55.6 NC_003409.1 + 133684 0.67 0.81626
Target:  5'- cCCCGGuugaagccuGCACCGCcAGCGguaGCAGg- -3'
miRNA:   3'- uGGGCC---------UGUGGCGuUCGUaa-CGUCac -5'
13452 3' -55.6 NC_003409.1 + 132949 0.67 0.81626
Target:  5'- cAUCCGGACcgGCCGCGGGauccGCAGg- -3'
miRNA:   3'- -UGGGCCUG--UGGCGUUCguaaCGUCac -5'
13452 3' -55.6 NC_003409.1 + 78233 0.68 0.798257
Target:  5'- --gUGGGgACCGCGAGgAUUGCAGcUGa -3'
miRNA:   3'- uggGCCUgUGGCGUUCgUAACGUC-AC- -5'
13452 3' -55.6 NC_003409.1 + 109124 0.68 0.789016
Target:  5'- uGCCCGGaACACCGCAgauccgaaggGGCGUggagGCu--- -3'
miRNA:   3'- -UGGGCC-UGUGGCGU----------UCGUAa---CGucac -5'
13452 3' -55.6 NC_003409.1 + 15833 0.71 0.617306
Target:  5'- aGCUCGGGCGCgGCGAGCccgUGUGGg- -3'
miRNA:   3'- -UGGGCCUGUGgCGUUCGua-ACGUCac -5'
13452 3' -55.6 NC_003409.1 + 133094 0.72 0.586103
Target:  5'- gUCCGGAUGCCGUgaAGGCg--GCGGUGg -3'
miRNA:   3'- uGGGCCUGUGGCG--UUCGuaaCGUCAC- -5'
13452 3' -55.6 NC_003409.1 + 109837 0.73 0.534878
Target:  5'- cGCCCaaGACGCCGCG-GCGggagGCGGUGg -3'
miRNA:   3'- -UGGGc-CUGUGGCGUuCGUaa--CGUCAC- -5'
13452 3' -55.6 NC_003409.1 + 127779 0.73 0.534878
Target:  5'- uCCCGGGCGCCGCGuAGUGgaggGCGGa- -3'
miRNA:   3'- uGGGCCUGUGGCGU-UCGUaa--CGUCac -5'
13452 3' -55.6 NC_003409.1 + 27655 0.73 0.495065
Target:  5'- cGCCCGGAaACCGCAuGCGUUcCAGUc -3'
miRNA:   3'- -UGGGCCUgUGGCGUuCGUAAcGUCAc -5'
13452 3' -55.6 NC_003409.1 + 13563 0.74 0.475666
Target:  5'- cGCCCGuGAaGCCGUAaacGGCGUUGCAGg- -3'
miRNA:   3'- -UGGGC-CUgUGGCGU---UCGUAACGUCac -5'
13452 3' -55.6 NC_003409.1 + 64748 0.75 0.428921
Target:  5'- cACCCGGGuuUCGCAGGC--UGCAGUGu -3'
miRNA:   3'- -UGGGCCUguGGCGUUCGuaACGUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.