Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13453 | 5' | -50.1 | NC_003409.1 | + | 29752 | 0.66 | 0.983458 |
Target: 5'- gGGGGuguGGGAUGGgGGUgUGGg -3' miRNA: 3'- gCCUCu--CCUUACCaCCGgACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 29882 | 0.66 | 0.983458 |
Target: 5'- gGGGGuguGGGAUGGgGGUgUGGg -3' miRNA: 3'- gCCUCu--CCUUACCaCCGgACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 29856 | 0.66 | 0.983458 |
Target: 5'- gGGGGuguGGGAUGGgGGUgUGGg -3' miRNA: 3'- gCCUCu--CCUUACCaCCGgACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 29830 | 0.66 | 0.983458 |
Target: 5'- gGGGGuguGGGAUGGgGGUgUGGg -3' miRNA: 3'- gCCUCu--CCUUACCaCCGgACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 29804 | 0.66 | 0.983458 |
Target: 5'- gGGGGuguGGGAUGGgGGUgUGGg -3' miRNA: 3'- gCCUCu--CCUUACCaCCGgACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 29778 | 0.66 | 0.983458 |
Target: 5'- gGGGGuguGGGAUGGgGGUgUGGg -3' miRNA: 3'- gCCUCu--CCUUACCaCCGgACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 61622 | 0.66 | 0.983458 |
Target: 5'- gCGGAGAGGg--GGUGGUgcgagUUGGc -3' miRNA: 3'- -GCCUCUCCuuaCCACCG-----GACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 87028 | 0.66 | 0.981315 |
Target: 5'- uGGAGcggcGGGAGUGuGUGuGCCcgGGUa -3' miRNA: 3'- gCCUC----UCCUUAC-CAC-CGGa-CCA- -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 129137 | 0.67 | 0.97364 |
Target: 5'- gCGGGGAGGAGggGGUGGg--GGa -3' miRNA: 3'- -GCCUCUCCUUa-CCACCggaCCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 50506 | 0.67 | 0.970635 |
Target: 5'- aGGAGAGGAggcgaacaGUGcGUGGCUcuuguucuUGGg -3' miRNA: 3'- gCCUCUCCU--------UAC-CACCGG--------ACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 78769 | 0.67 | 0.970635 |
Target: 5'- aCGGAcGGGucuucggugGGUGGCUUGGg -3' miRNA: 3'- -GCCUcUCCuua------CCACCGGACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 49161 | 0.67 | 0.963902 |
Target: 5'- aCGG-GAGGcuUGGUGGCCa--- -3' miRNA: 3'- -GCCuCUCCuuACCACCGGacca -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 133308 | 0.68 | 0.96016 |
Target: 5'- aGGGcguugccAGGAGUGGUGGCgaUGGUg -3' miRNA: 3'- gCCUc------UCCUUACCACCGg-ACCA- -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 108814 | 0.68 | 0.950561 |
Target: 5'- uGGAGuGuGGAUGGUgauauggucuccugGGCCUGGc -3' miRNA: 3'- gCCUCuC-CUUACCA--------------CCGGACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 23974 | 0.69 | 0.937462 |
Target: 5'- gCGGGGGGGGggcuaGUGaGUcacgGGCCUGGa -3' miRNA: 3'- -GCCUCUCCU-----UAC-CA----CCGGACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 76376 | 0.69 | 0.920524 |
Target: 5'- uCGGucAGuucuGUGGUGGCCUGGa -3' miRNA: 3'- -GCCucUCcu--UACCACCGGACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 108528 | 0.7 | 0.907832 |
Target: 5'- aGGGGGGGAAggccgcGGUGGaauCCUGGc -3' miRNA: 3'- gCCUCUCCUUa-----CCACC---GGACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 66649 | 0.7 | 0.901071 |
Target: 5'- gGGuGGGGGAUGGUGGgaggCUGGc -3' miRNA: 3'- gCCuCUCCUUACCACCg---GACCa -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 117736 | 0.7 | 0.894036 |
Target: 5'- uCGGuGGGGGAgGGUGcCCUGGUu -3' miRNA: 3'- -GCCuCUCCUUaCCACcGGACCA- -5' |
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13453 | 5' | -50.1 | NC_003409.1 | + | 48971 | 0.72 | 0.790564 |
Target: 5'- --cGGAGGAAUGGUGGacggcuccguCCUGGUg -3' miRNA: 3'- gccUCUCCUUACCACC----------GGACCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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