miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13456 3' -45.2 NC_003409.1 + 24210 0.68 0.998645
Target:  5'- cGCGCCAGCG--GUGGGc--- -3'
miRNA:   3'- uCGCGGUCGUugUACCCuagu -5'
13456 3' -45.2 NC_003409.1 + 104005 0.68 0.998645
Target:  5'- aGGCcuGCCAGCGucaGUGGGA-CAa -3'
miRNA:   3'- -UCG--CGGUCGUug-UACCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 102358 0.68 0.998335
Target:  5'- gGGgGUCGGuCGAUAUGGGAgggUCAu -3'
miRNA:   3'- -UCgCGGUC-GUUGUACCCU---AGU- -5'
13456 3' -45.2 NC_003409.1 + 91041 0.68 0.998335
Target:  5'- aGGCGCC-GCGACGUGGu---- -3'
miRNA:   3'- -UCGCGGuCGUUGUACCcuagu -5'
13456 3' -45.2 NC_003409.1 + 130886 0.68 0.997967
Target:  5'- cAGCGCUGGgGugGUGuGGGUCc -3'
miRNA:   3'- -UCGCGGUCgUugUAC-CCUAGu -5'
13456 3' -45.2 NC_003409.1 + 119801 0.68 0.997534
Target:  5'- aGGCGCCGGC---GUGGGcgCc -3'
miRNA:   3'- -UCGCGGUCGuugUACCCuaGu -5'
13456 3' -45.2 NC_003409.1 + 49678 0.69 0.997026
Target:  5'- gAGCGCCAGCcaGACgGUGGuGUCc -3'
miRNA:   3'- -UCGCGGUCG--UUG-UACCcUAGu -5'
13456 3' -45.2 NC_003409.1 + 111911 0.69 0.997026
Target:  5'- -aCGCCGGCGACAaugaaUGGGGa-- -3'
miRNA:   3'- ucGCGGUCGUUGU-----ACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 27220 0.69 0.997026
Target:  5'- -aCGCUGGgGACGUGGGAUa- -3'
miRNA:   3'- ucGCGGUCgUUGUACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 105225 0.69 0.996435
Target:  5'- cAGCGCUguGGCG-CcUGGGGUCGc -3'
miRNA:   3'- -UCGCGG--UCGUuGuACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 50062 0.69 0.996435
Target:  5'- aGGCGuCCGGUAcugGCGUGGGcgCc -3'
miRNA:   3'- -UCGC-GGUCGU---UGUACCCuaGu -5'
13456 3' -45.2 NC_003409.1 + 37471 0.69 0.99529
Target:  5'- uAGCGCUcugcccgggcaccuuGGCGGauuUGGGAUCAa -3'
miRNA:   3'- -UCGCGG---------------UCGUUgu-ACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 12500 0.69 0.994961
Target:  5'- aGGC-CCAGUAGCAUGcGGGUg- -3'
miRNA:   3'- -UCGcGGUCGUUGUAC-CCUAgu -5'
13456 3' -45.2 NC_003409.1 + 133751 0.69 0.994961
Target:  5'- uGUGCCAGacaGGCGUucGGGAUCc -3'
miRNA:   3'- uCGCGGUCg--UUGUA--CCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 10818 0.69 0.994058
Target:  5'- --gGCCAGCAGCGUGG--UCAc -3'
miRNA:   3'- ucgCGGUCGUUGUACCcuAGU- -5'
13456 3' -45.2 NC_003409.1 + 109146 0.7 0.991861
Target:  5'- cGCagGCCGGgcGCGUGGGGUCGa -3'
miRNA:   3'- uCG--CGGUCguUGUACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 94258 0.7 0.991861
Target:  5'- cGUGCCAGUGGgGUuGGGGUCc -3'
miRNA:   3'- uCGCGGUCGUUgUA-CCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 91468 0.7 0.989065
Target:  5'- cAGCGCUGGCAagaACAucUGGGGUg- -3'
miRNA:   3'- -UCGCGGUCGU---UGU--ACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 33943 0.71 0.985572
Target:  5'- aGGCGCCAGCGAgGcgcgcuccUGGGGg-- -3'
miRNA:   3'- -UCGCGGUCGUUgU--------ACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 115614 0.71 0.985572
Target:  5'- uGGUGUCuguaaucuGGCAGCAUGGGGUgGg -3'
miRNA:   3'- -UCGCGG--------UCGUUGUACCCUAgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.