miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13456 3' -45.2 NC_003409.1 + 65528 0.71 0.978813
Target:  5'- cGUGCCuuGCAuagucuGCGUGGGGUCu -3'
miRNA:   3'- uCGCGGu-CGU------UGUACCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 68431 0.66 0.999737
Target:  5'- cGcCGCCAGCAACcccucuGGAUCu -3'
miRNA:   3'- uC-GCGGUCGUUGuac---CCUAGu -5'
13456 3' -45.2 NC_003409.1 + 69249 0.67 0.999564
Target:  5'- aGGUGCCAGUAACAgaucccGGUCGu -3'
miRNA:   3'- -UCGCGGUCGUUGUacc---CUAGU- -5'
13456 3' -45.2 NC_003409.1 + 82833 0.67 0.999564
Target:  5'- uGCGCCauGGUGGCggGGGAUg- -3'
miRNA:   3'- uCGCGG--UCGUUGuaCCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 83387 0.66 0.99966
Target:  5'- uGUGCagCGGCAACccgggccgcaAUGGGGUCGg -3'
miRNA:   3'- uCGCG--GUCGUUG----------UACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 88344 0.67 0.99912
Target:  5'- aGGCGCCAucGgGGCugaGGGGUCGc -3'
miRNA:   3'- -UCGCGGU--CgUUGua-CCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 88684 0.66 0.999847
Target:  5'- cGCuGCCGGCAgGCAgGGGcgCGg -3'
miRNA:   3'- uCG-CGGUCGU-UGUaCCCuaGU- -5'
13456 3' -45.2 NC_003409.1 + 91041 0.68 0.998335
Target:  5'- aGGCGCC-GCGACGUGGu---- -3'
miRNA:   3'- -UCGCGGuCGUUGUACCcuagu -5'
13456 3' -45.2 NC_003409.1 + 91468 0.7 0.989065
Target:  5'- cAGCGCUGGCAagaACAucUGGGGUg- -3'
miRNA:   3'- -UCGCGGUCGU---UGU--ACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 94258 0.7 0.991861
Target:  5'- cGUGCCAGUGGgGUuGGGGUCc -3'
miRNA:   3'- uCGCGGUCGUUgUA-CCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 100033 0.66 0.999668
Target:  5'- aGGUGcCCAGCGACucucaagcaguaucuUGGGAUUu -3'
miRNA:   3'- -UCGC-GGUCGUUGu--------------ACCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 100445 0.66 0.999847
Target:  5'- cGGCGCUGGac-CAUGGGA-CAu -3'
miRNA:   3'- -UCGCGGUCguuGUACCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 102358 0.68 0.998335
Target:  5'- gGGgGUCGGuCGAUAUGGGAgggUCAu -3'
miRNA:   3'- -UCgCGGUC-GUUGUACCCU---AGU- -5'
13456 3' -45.2 NC_003409.1 + 104005 0.68 0.998645
Target:  5'- aGGCcuGCCAGCGucaGUGGGA-CAa -3'
miRNA:   3'- -UCG--CGGUCGUug-UACCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 105225 0.69 0.996435
Target:  5'- cAGCGCUguGGCG-CcUGGGGUCGc -3'
miRNA:   3'- -UCGCGG--UCGUuGuACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 109146 0.7 0.991861
Target:  5'- cGCagGCCGGgcGCGUGGGGUCGa -3'
miRNA:   3'- uCG--CGGUCguUGUACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 111911 0.69 0.997026
Target:  5'- -aCGCCGGCGACAaugaaUGGGGa-- -3'
miRNA:   3'- ucGCGGUCGUUGU-----ACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 113441 0.76 0.844374
Target:  5'- uGCGCCAGCGACG-GGcGGUCc -3'
miRNA:   3'- uCGCGGUCGUUGUaCC-CUAGu -5'
13456 3' -45.2 NC_003409.1 + 114394 0.67 0.999298
Target:  5'- uGGCGaCAGCGGgGUGGGGc-- -3'
miRNA:   3'- -UCGCgGUCGUUgUACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 115614 0.71 0.985572
Target:  5'- uGGUGUCuguaaucuGGCAGCAUGGGGUgGg -3'
miRNA:   3'- -UCGCGG--------UCGUUGUACCCUAgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.