miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13456 3' -45.2 NC_003409.1 + 10023 0.76 0.844374
Target:  5'- uGCuGCCGGCGGCggGGGGUCc -3'
miRNA:   3'- uCG-CGGUCGUUGuaCCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 10818 0.69 0.994058
Target:  5'- --gGCCAGCAGCGUGG--UCAc -3'
miRNA:   3'- ucgCGGUCGUUGUACCcuAGU- -5'
13456 3' -45.2 NC_003409.1 + 12500 0.69 0.994961
Target:  5'- aGGC-CCAGUAGCAUGcGGGUg- -3'
miRNA:   3'- -UCGcGGUCGUUGUAC-CCUAgu -5'
13456 3' -45.2 NC_003409.1 + 21563 0.66 0.999737
Target:  5'- cGUGCCuGCcaaggaGUGGGAUCu -3'
miRNA:   3'- uCGCGGuCGuug---UACCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 23189 0.76 0.844374
Target:  5'- gAGCGcCCGGguGCAcGGGGUCAc -3'
miRNA:   3'- -UCGC-GGUCguUGUaCCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 23485 0.67 0.999298
Target:  5'- cGgGCCGGCGGaccaAUGGGAg-- -3'
miRNA:   3'- uCgCGGUCGUUg---UACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 24210 0.68 0.998645
Target:  5'- cGCGCCAGCG--GUGGGc--- -3'
miRNA:   3'- uCGCGGUCGUugUACCCuagu -5'
13456 3' -45.2 NC_003409.1 + 24214 0.72 0.973158
Target:  5'- cGCGCgCGGCGGCAcgUGGGAc-- -3'
miRNA:   3'- uCGCG-GUCGUUGU--ACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 27220 0.69 0.997026
Target:  5'- -aCGCUGGgGACGUGGGAUa- -3'
miRNA:   3'- ucGCGGUCgUUGUACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 27850 0.66 0.99966
Target:  5'- aGGCGCCacAGCGACGccGGcgCAg -3'
miRNA:   3'- -UCGCGG--UCGUUGUacCCuaGU- -5'
13456 3' -45.2 NC_003409.1 + 33943 0.71 0.985572
Target:  5'- aGGCGCCAGCGAgGcgcgcuccUGGGGg-- -3'
miRNA:   3'- -UCGCGGUCGUUgU--------ACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 37471 0.69 0.99529
Target:  5'- uAGCGCUcugcccgggcaccuuGGCGGauuUGGGAUCAa -3'
miRNA:   3'- -UCGCGG---------------UCGUUgu-ACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 40977 0.72 0.976108
Target:  5'- gGGCGCCAGCu-CGUGGcGAa-- -3'
miRNA:   3'- -UCGCGGUCGuuGUACC-CUagu -5'
13456 3' -45.2 NC_003409.1 + 46867 0.67 0.999445
Target:  5'- uGGCuGgCGGCgAGCGUGGGAUa- -3'
miRNA:   3'- -UCG-CgGUCG-UUGUACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 47302 0.66 0.999737
Target:  5'- cGUGCC-GCAGCAacUGGGG-CAc -3'
miRNA:   3'- uCGCGGuCGUUGU--ACCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 49678 0.69 0.997026
Target:  5'- gAGCGCCAGCcaGACgGUGGuGUCc -3'
miRNA:   3'- -UCGCGGUCG--UUG-UACCcUAGu -5'
13456 3' -45.2 NC_003409.1 + 50062 0.69 0.996435
Target:  5'- aGGCGuCCGGUAcugGCGUGGGcgCc -3'
miRNA:   3'- -UCGC-GGUCGU---UGUACCCuaGu -5'
13456 3' -45.2 NC_003409.1 + 53899 0.66 0.999847
Target:  5'- cGGaUGCCAGUAGCAUGcugauGAUCGc -3'
miRNA:   3'- -UC-GCGGUCGUUGUACc----CUAGU- -5'
13456 3' -45.2 NC_003409.1 + 55242 0.73 0.958717
Target:  5'- cAGCaGCCauAGCAACGgaagGGGGUCGu -3'
miRNA:   3'- -UCG-CGG--UCGUUGUa---CCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 57223 0.66 0.999708
Target:  5'- -aCGCCAGCuggugcuccugucGCAUGGGaAUCGc -3'
miRNA:   3'- ucGCGGUCGu------------UGUACCC-UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.