miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13456 3' -45.2 NC_003409.1 + 133034 0.67 0.999574
Target:  5'- cGGCGCCAGCGccuGCAggugccucaccaccgGGGccggGUCAu -3'
miRNA:   3'- -UCGCGGUCGU---UGUa--------------CCC----UAGU- -5'
13456 3' -45.2 NC_003409.1 + 27220 0.69 0.997026
Target:  5'- -aCGCUGGgGACGUGGGAUa- -3'
miRNA:   3'- ucGCGGUCgUUGUACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 111911 0.69 0.997026
Target:  5'- -aCGCCGGCGACAaugaaUGGGGa-- -3'
miRNA:   3'- ucGCGGUCGUUGU-----ACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 119801 0.68 0.997534
Target:  5'- aGGCGCCGGC---GUGGGcgCc -3'
miRNA:   3'- -UCGCGGUCGuugUACCCuaGu -5'
13456 3' -45.2 NC_003409.1 + 130886 0.68 0.997967
Target:  5'- cAGCGCUGGgGugGUGuGGGUCc -3'
miRNA:   3'- -UCGCGGUCgUugUAC-CCUAGu -5'
13456 3' -45.2 NC_003409.1 + 91041 0.68 0.998335
Target:  5'- aGGCGCC-GCGACGUGGu---- -3'
miRNA:   3'- -UCGCGGuCGUUGUACCcuagu -5'
13456 3' -45.2 NC_003409.1 + 114394 0.67 0.999298
Target:  5'- uGGCGaCAGCGGgGUGGGGc-- -3'
miRNA:   3'- -UCGCgGUCGUUgUACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 119525 0.67 0.999298
Target:  5'- cGgGCCGGCGGaccaAUGGGAg-- -3'
miRNA:   3'- uCgCGGUCGUUg---UACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 69249 0.67 0.999564
Target:  5'- aGGUGCCAGUAACAgaucccGGUCGu -3'
miRNA:   3'- -UCGCGGUCGUUGUacc---CUAGU- -5'
13456 3' -45.2 NC_003409.1 + 37471 0.69 0.99529
Target:  5'- uAGCGCUcugcccgggcaccuuGGCGGauuUGGGAUCAa -3'
miRNA:   3'- -UCGCGG---------------UCGUUgu-ACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 10818 0.69 0.994058
Target:  5'- --gGCCAGCAGCGUGG--UCAc -3'
miRNA:   3'- ucgCGGUCGUUGUACCcuAGU- -5'
13456 3' -45.2 NC_003409.1 + 91468 0.7 0.989065
Target:  5'- cAGCGCUGGCAagaACAucUGGGGUg- -3'
miRNA:   3'- -UCGCGGUCGU---UGU--ACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 10023 0.76 0.844374
Target:  5'- uGCuGCCGGCGGCggGGGGUCc -3'
miRNA:   3'- uCG-CGGUCGUUGuaCCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 113441 0.76 0.844374
Target:  5'- uGCGCCAGCGACG-GGcGGUCc -3'
miRNA:   3'- uCGCGGUCGUUGUaCC-CUAGu -5'
13456 3' -45.2 NC_003409.1 + 23189 0.76 0.844374
Target:  5'- gAGCGcCCGGguGCAcGGGGUCAc -3'
miRNA:   3'- -UCGC-GGUCguUGUaCCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 24214 0.72 0.973158
Target:  5'- cGCGCgCGGCGGCAcgUGGGAc-- -3'
miRNA:   3'- uCGCG-GUCGUUGU--ACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 40977 0.72 0.976108
Target:  5'- gGGCGCCAGCu-CGUGGcGAa-- -3'
miRNA:   3'- -UCGCGGUCGuuGUACC-CUagu -5'
13456 3' -45.2 NC_003409.1 + 65528 0.71 0.978813
Target:  5'- cGUGCCuuGCAuagucuGCGUGGGGUCu -3'
miRNA:   3'- uCGCGGu-CGU------UGUACCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 132672 0.71 0.978813
Target:  5'- cAGCGCCAGCcaggggGACGggGGGGUgGa -3'
miRNA:   3'- -UCGCGGUCG------UUGUa-CCCUAgU- -5'
13456 3' -45.2 NC_003409.1 + 33943 0.71 0.985572
Target:  5'- aGGCGCCAGCGAgGcgcgcuccUGGGGg-- -3'
miRNA:   3'- -UCGCGGUCGUUgU--------ACCCUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.